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(-) Description

Title :  CRYSTAL STRUCTURE OF DENGUE VIRUS SEROTYPE 3 RNA DEPENDENT RNA POLYMERASE BOUND TO HEE1-2TYR, A NEW PYRIDOBENZOTHIZOLE INHIBITOR
 
Authors :  D. Tarantino, E. Mastrangelo, M. Milani
Date :  10 Mar 16  (Deposition) - 05 Oct 16  (Release) - 12 Oct 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.00
Chains :  Asym./Biol. Unit :  A
Keywords :  Rna Dependent Rna Polymerase, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. Tarantino, R. Cannalire, E. Mastrangelo, R. Croci, G. Querat, M. L. Barreca, M. Bolognesi, G. Manfroni, V. Cecchetti, M. Milani
Targeting Flavivirus Rna Dependent Rna Polymerase Through A Pyridobenzothiazole Inhibitor.
Antiviral Res. V. 134 226 2016
PubMed-ID: 27649989  |  Reference-DOI: 10.1016/J.ANTIVIRAL.2016.09.007

(-) Compounds

Molecule 1 - RNA DEPENDENT RNA POLYMERASE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Organism Scientific: DENGUE VIRUS 3
    Organism Taxid: 11069

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 3)

Asymmetric/Biological Unit (2, 3)
No.NameCountTypeFull Name
16CJ1Ligand/IonN-[8-(CYCLOHEXYLOXY)-1-OXO-2-PHENYL-1H-PYRIDO[2,1-B][1,3]BENZOTHIAZOLE-4-CARBONYL]-L-TYROSINE
2ZN2Ligand/IonZINC ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:712 , HIS A:714 , CYS A:728 , CYS A:847binding site for residue ZN A 1001
2AC2SOFTWAREGLU A:437 , HIS A:441 , CYS A:446 , CYS A:449binding site for residue ZN A 1002
3AC3SOFTWAREGLY A:604 , THR A:605 , TRP A:795binding site for residue 6CJ A 1003

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5IQ6)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5IQ6)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5IQ6)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5IQ6)

(-) Exons   (0, 0)

(no "Exon" information available for 5IQ6)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:576
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...hhhhhhhhhhhh...............eeee.......eehhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhh.......ee..hhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhh......hhhhhhhhhhhhhh............hhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeeee...eeeeeee.........hhhhhhhhhhhhhhhhhhhhhh...hhhhhhh....hhhhhhhhhhhhhhhhhheeee..eeee...hhhhhh.hhhhhhhh..........................eeeeee.....eeeeee.hhhhhhhhhhee.....hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh........................hhhhhhhhhhh.............hhhhh...hhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5iq6 A 273 MDVIGERIKRIKEEHNSTWHYDDENPYKTWAYHGSYEVKSSMINGVVKLLTKPWDVVPMVTQMAMTDTTPFGQQRVFKEKVDTRTPRPLPGTRKVMEITAEWLWRTLGRNKRPRLCTREEFTKKVRTNAASAKAAVEDEEFWKLVDRERELHKLGKCGSCVYNMGSRAIWYMWLGVRYLEFEALGFLNEDHWFSRENSYSGVEGEGLHKLGYILRDISKIPGGAMYADDTAGWDTRITEDDLHNEEKIIQQMDPEHRQLANAIFKLTYQNKVVKVQRPTTVMDIISRKDQRGSGQVGTYGLNTFTNMEAQLVRQMEGEGVLTKADLENPHLLEKKITQWLETKGVERLKRMAISGDDCVVKPIDDRFANALLALNDMGKVRKDIPQWQPSKGWHDWQQVPFCSHHFHELIMKDGRKLVVPCRPQDELIGRARISQGAGWSLRETACLGKAYAQMWSLMYFHRRDLRLASNAICSAVPVHWVPTSRTTWSIHAHHQWMTTEDMLTVWNRVWIEENPWMEDKTPVTTWENVPYLGKREDQWCGSLIGLTSRATWAQNIPTAIQQVRSLIGNEEFLDYM 883
                                   282       292       302       317       327       337       347       357       367       377       387       397       407|      429       439       449   ||  474       484       494       504       514       524       534       544       554       564       574       587       597       607       617       627       637       647       657       667       677       687       697       707       717       727       737       747       757       767       777       787       797       807       817       827       837       847       857       867       877      
                                                                311|                                                                                       407|                              453|                                                                                                               583|                                                                                                                                                                                                                                                                                                        
                                                                 317                                                                                        420                               469                                                                                                                587
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5IQ6)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5IQ6)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5IQ6)

(-) Gene Ontology  (45, 45)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        Q6DLV0_9FLAV | Q6DLV0: 3j6s 3j6t 3j6u
UniProtKB/TrEMBL
        Q6DLV0_9FLAV | Q6DLV0: 2j7u 2j7w 3vws 4c11 4hhj 4v0q 4v0r 5dto 5eiw 5f3t 5f3z 5f41 5hmw 5hmx 5hmy 5hmz 5hn0 5i3p 5i3q 5jjr 5jjs

(-) Related Entries Specified in the PDB File

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