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(-) Description

Title :  CRYSTAL STRUCTURE OF AN OXIDOREDUCTASE FROM BURKHOLDERIA VIETNAMIENSIS
 
Authors :  Seattle Structural Genomics Center For Infectious Disease (S
Date :  24 Feb 16  (Deposition) - 16 Mar 16  (Release) - 16 Mar 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.95
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (2x)
Keywords :  Ssgcid, Oxidoreductase, Short Chain Dehydrogenase/Reductase Family, Burkholderia Vietnamiensis, Structural Genomics, Seattle Structural Genomics Center For Infectious Disease (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. J. Mayclin, J. Abendroth, D. D. Lorimer, T. E. Edwards
Crystal Structure Of An Oxidoreductase From Burkholderia Vietnamiensis
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - SHORT-CHAIN DEHYDROGENASE/REDUCTASE SDR
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: BUVIA.00010.K.B1
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: BCEP1808_2377
    Organism Scientific: BURKHOLDERIA VIETNAMIENSIS (STRAIN G4 / LMG 22486)
    Organism Taxid: 269482
    Strain: G4 / LMG 22486

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (2x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 7)

Asymmetric Unit (1, 7)
No.NameCountTypeFull Name
1SO47Ligand/IonSULFATE ION
Biological Unit 1 (1, 14)
No.NameCountTypeFull Name
1SO414Ligand/IonSULFATE ION

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELYS A:17 , GLY A:18 , ARG A:21 , ASP A:189 , ARG A:225 , HOH A:492binding site for residue SO4 A 301
2AC2SOFTWAREGLY A:18 , LEU A:19 , THR A:188 , ARG A:190 , HOH A:402 , HOH A:433 , HOH A:448 , HOH A:492 , HOH A:502binding site for residue SO4 A 302
3AC3SOFTWAREGLY B:18 , LEU B:19 , THR B:188 , ARG B:190 , HOH B:403 , HOH B:459 , HOH B:473 , HOH B:500 , HOH B:545binding site for residue SO4 B 301
4AC4SOFTWAREARG A:41 , LYS B:17 , GLY B:18 , THR B:188 , ASP B:189 , ARG B:225 , HOH B:405 , HOH B:434 , HOH B:473 , HOH B:498binding site for residue SO4 B 302
5AC5SOFTWAREGLY B:91 , SER B:153 , ARG B:157 , HOH B:402 , HOH B:423 , HOH B:456binding site for residue SO4 B 303
6AC6SOFTWAREARG B:212 , ARG B:213binding site for residue SO4 B 304
7AC7SOFTWAREARG B:39 , THR B:40 , HOH B:451binding site for residue SO4 B 305

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5IDX)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5IDX)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5IDX)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5IDX)

(-) Exons   (0, 0)

(no "Exon" information available for 5IDX)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:261
                                                                                                                                                                                                                                                                                                     
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........eeee....hhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhhhhhh...eeeee....hhhhhhhhhhhh....eeee........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeee.hhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh...eeeeeeee....hhhhhhhhhhhhhhh..hhhhhhhhhhhh.......hhhhhhhhhhhhh..........eeee......... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5idx A  -1 HHMDLGIAGKTALVCAASKGLGRGCAEALAAEGVNLVIVARTRDTLERTADEIRAASNVSVATVACDITTPDGRAAALAACPQPDILVNNAGGPPPGDFRDFSHDDWIRALESNMLTPIELIRATVDGMIARGFGRIVNITSSAVKAPIDVLALSNGARSGLTGFVAGLARKVVGQGVTINNLLPGLFDTDRIATTLAAAANAQGVTVDELRARRTRDIPAGRLGTRAEFGAACAFLCSVHAGYITGQNWLLDGGAYPGTF 259
                                     8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258 


Chain B from PDB  Type:PROTEIN  Length:263
                                                                                                                                                                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............eeee....hhhhhhhhhhhhh...eeeeee.hhhhhhhhhhhhhhhh...eeeee....hhhhhhhhhhhh....eeee........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeee.hhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh...eeeeeeee....hhhhhhhhhhhhhhhh.hhhhhhhhhhhh.......hhhhhhhhhhhhh..........eeee......... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5idx B  -3 HHHHMDLGIAGKTALVCAASKGLGRGCAEALAAEGVNLVIVARTRDTLERTADEIRAASNVSVATVACDITTPDGRAAALAACPQPDILVNNAGGPPPGDFRDFSHDDWIRALESNMLTPIELIRATVDGMIARGFGRIVNITSSAVKAPIDVLALSNGARSGLTGFVAGLARKVVGQGVTINNLLPGLFDTDRIATTLAAAANAQGVTVDELRARRTRDIPAGRLGTRAEFGAACAFLCSVHAGYITGQNWLLDGGAYPGTF 259
                                     6        16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5IDX)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5IDX)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5IDX)

(-) Gene Ontology  (0, 0)

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        A4JGH3_BURVG | A4JGH3: 5idy

(-) Related Entries Specified in the PDB File

5idw 5idy