5IC9 - JenaLib

Asym./Biol. Unit (Jmol Viewer)

Title :   STRUCTURE OF THE CTD COMPLEX OF UTP12 AND UTP13

Authors :   C. Zhang, K. Ye

Date :   23 Feb 16 (Deposition) - 06 Jul 16 (Release) - 14 Sep 16 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   3.70

Chains :   Asym./Biol. Unit : A,B,C,D

Keywords :   Solenoid Structure, Rrna Processing, 90S Preribosome, Protein Binding, Structural Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   C. Zhang, Q. Sun, R. Chen, X. Chen, J. Lin, K. Ye
Integrative Structural Analysis Of The Utpb Complex, An Early Assembly Factor For Eukaryotic Small Ribosomal Subunits
Nucleic Acids Res. V. 44 7475 2016
PubMed-ID: 27330138 | Reference-DOI: 10.1093/NAR/GKW562

Molecule 1 - PUTATIVE UNCHARACTERIZED PROTEIN
	Chains	:	A, C
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21(DE3)
	Expression System Strain	:	BL21(DE3)-RIL
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Fragment	:	UNP RESIDUES 748-956
	Gene	:	CTHT_0003430
	Organism Scientific	:	CHAETOMIUM THERMOPHILUM (STRAIN DSM 1495 / CBS 144.50 / IMI 039719)
	Organism Taxid	:	759272
	Strain	:	DSM 1495 / CBS 144.50 / IMI 039719
	Synonym	:	U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 12

Molecule 2 - PUTATIVE UNCHARACTERIZED PROTEIN
	Chains	:	B, D
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21(DE3)
	Expression System Strain	:	BL21(DE3)-RIL
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Fragment	:	UNP RESIDUES 738-912
	Gene	:	CTHT_0065530
	Organism Scientific	:	CHAETOMIUM THERMOPHILUM (STRAIN DSM 1495 / CBS 144.50 / IMI 039719)
	Organism Taxid	:	759272
	Strain	:	DSM 1495 / CBS 144.50 / IMI 039719
	Synonym	:	U3 SMALL NUCLEOLAR RNA-ASSOCIATED PROTEIN 13

		1	2	3	4
Asymmetric/Biological Unit	:	A	B	C	D

Summary Information (see also Sequences/Alignments below)

(no "Ligand,Modified Residues,Ions" information available for 5IC9)

(no "Site" information available for 5IC9)

(no "SS Bond" information available for 5IC9)

Asymmetric/Biological Unit

No.	Residues
1	Asn B:765	-	His B:766
2	Pro C:825	-	Ala C:826

(no "SAP(SNP)/Variant" information available for 5IC9)

(no "PROSITE Motif" information available for 5IC9)

(no "Exon" information available for 5IC9)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:129
                                                                                                                                                                 
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhh....hhhhhhhh...hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ic9 A 771 QTVETLMAGERIAEALELGMTDLNTIREPAETYVLNTLQKIKPASLHDALLVLPFSTIPSLLTFLNLFAQRELNVPLTCRILFFVLKTHRTMRATLEKVRANLRAALRRQKDEMGFNIAALKVVSMQLR 932
                                   780       790       826       836       846       856       866       876       893       903       913       923         
                                                     798|                                                         885|                                       
                                                      825                                                          893

Chain B from PDB  Type:PROTEIN  Length:132
                                                                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhh.hhhhhhhhhhhh..hhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5ic9 B 742 EQTLENYIHAGAYRDAIVLALQLNHPGRLLNLFTNVVTTRNPDPDSLTGLKAVDDVLAKLSDEQIFQLLLRLRDWNTNARTAPVAQRVLWALFKSHPANLNEVLDAIKVYTERHYKRIEELVDESYLVEYTL 888
                                   751       761       771       781       791       801       811       821       831       856       866       876       886  
                                                                                                                            840|                                
                                                                                                                             856

Chain C from PDB  Type:PROTEIN  Length:134
                                                                                                                                                                      
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..............hhhhhhhhhhh......hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ic9 C 773 VETLMAGERIAEALELGMTDLNTIREWEEARQINPNIAPPQRNPIPAETYVLNTLQKIKPPFSTIPSLLTFLNLFAQRELNVPLTCRILFFVLKTHTMRATLEKVRANLRAALRRQKDEMGFNIAALKVVSMQL 931
                                   782       792       802       812    || 829       839|      859       869       879     ||897       907       917       927    
                                                                      817|           839|                                885|                                     
                                                                       825            850                                 894

Chain D from PDB  Type:PROTEIN  Length:103
                                                                                                                                       
               SCOP domains ------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhh...........hhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------- Transcript
                 5ic9 D 767 PGRLLNLFTNVVTTRNPDPDSLTGLKAVDDVLAKLSDEQIFQLLLRLRDWNTNARTAPVAQRVLWALFKSHPEVLDAIKVYTERHYKRIEELVDESYLVEYTL 888
                                   776       786       796       806       816       826       836 ||    865       875       885   
                                                                                                 838|                              
                                                                                                  858

Legend:		→ Mismatch	(orange background)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

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	Cis Peptide Bonds
		Asn B:765 - His B:766	[ RasMol ]
		Pro C:825 - Ala C:826	[ RasMol ]

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Description

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Ligands, Modified Residues, Ions (0, 0)

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