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(-) Description

Title :  CRYSTAL STRUCTURE OF EPHRIN A2 (EPHA2) RECEPTOR PROTEIN KINASE WITH DASATINIB
 
Authors :  D. Kudlinzki, V. L. Linhard, S. L. Gande, S. Sreeramulu, K. Saxena, S. He G. Medard, B. Kuester, H. Schwalbe
Date :  21 Feb 16  (Deposition) - 09 Nov 16  (Release) - 28 Dec 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.23
Chains :  Asym./Biol. Unit :  A
Keywords :  Transferase, Tyrosine-Protein Kinase, Receptor, Atp-Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Heinzlmeir, D. Kudlinzki, S. Sreeramulu, S. Klaeger, S. L. Gande, V. Linhard, M. Wilhelm, H. Qiao, D. Helm, B. Ruprecht, K. Saxena, G. Medard, H. Schwalbe, B. Kuster
Chemical Proteomics And Structural Biology Define Epha2 Inhibition By Clinical Kinase Drugs.
Acs Chem. Biol. V. 11 3400 2016
PubMed-ID: 27768280  |  Reference-DOI: 10.1021/ACSCHEMBIO.6B00709
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - EPHRIN TYPE-A RECEPTOR 2
    Chains: A
    EC Number: 2.7.10.1
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Cell Line: SF9
    Expression System Common: FALL ARMYWORM
    Expression System Taxid: 7108
    Fragment: UNP RESIDUES 596-900
    Gene: EPHA2, ECK
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: EPITHELIAL CELL KINASE,TYROSINE-PROTEIN KINASE RECEPTOR ECK

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

Asymmetric/Biological Unit (2, 4)
No.NameCountTypeFull Name
11N11Ligand/IonN-(2-CHLORO-6-METHYLPHENYL)-2-({6-[4-(2-HYDROXYETHYL)PIPERAZIN-1-YL]-2-METHYLPYRIMIDIN-4-YL}AMINO)-1,3-THIAZOLE-5-CARBOXAMIDE
2EDO3Ligand/Ion1,2-ETHANEDIOL

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREILE A:619 , ALA A:644 , ILE A:645 , LYS A:646 , GLU A:663 , MET A:667 , ILE A:690 , THR A:692 , GLU A:693 , TYR A:694 , MET A:695 , GLU A:696 , GLY A:698 , LYS A:702 , GLU A:706 , LEU A:746 , SER A:756 , HOH A:1111 , HOH A:1204 , HOH A:1210 , HOH A:1280 , HOH A:1318binding site for residue 1N1 A 1001
2AC2SOFTWAREASN A:732 , GLU A:815 , LYS A:863 , PHE A:864 , ALA A:865 , HOH A:1144binding site for residue EDO A 1002
3AC3SOFTWAREILE A:781 , THR A:784 , ILE A:789 , MET A:827 , ILE A:830 , HOH A:1118 , HOH A:1121binding site for residue EDO A 1003
4AC4SOFTWAREHIS A:673 , ASN A:748 , ASN A:750 , VAL A:752 , LYS A:754 , HOH A:1186binding site for residue EDO A 1004

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5I9Y)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Lys A:686 -Pro A:687

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5I9Y)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5I9Y)

(-) Exons   (0, 0)

(no "Exon" information available for 5I9Y)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:287
                                                                                                                                                                                                                                                                                                                               
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhh...hhh.eeeeeeeee....eeeeeee.....eeeeeeee....hhhhhhhhhhhhhhhh.........eeeee.....eeeeee....eehhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh.......hhh.eee.....eee.....hhhhhhh.....hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh.........hhhhhhhhhhh..........hhhhhhhhhhhh..hhhhh.hhhhhhhhhhhhhhhhhhhhh............. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5i9y A 600 AVLKFTTEIHPSCVTRQKVIGAGEFGEVYKGMLKTKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVISKYKPMMIITEYMENGALDKFLREKDGEFSVLQLVGMLRGIAAGMKYLANMNYVHRDLAARNILVNSNLVCKVSDFGLSRVLEDDPEATYPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWELSNHEVMKAINDGFRLPTPMDCPSAIYQLMMQCWQQERARRPKFADIVSILDKLIRAPDSLKTLADFDPRVSIRLP 896
                                   609       619       629    || 642       652       662       672       682       692       702       712       722       732       742       752       762       772|      789       799       809       819       829       839       849       859       869       879       889       
                                                            634|                                                                                                                                   772|                                                                                                                    
                                                             638                                                                                                                                    780
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5I9Y)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5I9Y)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5I9Y)

(-) Gene Ontology  (62, 62)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Lys A:686 - Pro A:687   [ RasMol ]  
 

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  EPHA2_HUMAN | P29317
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        EPHA2_HUMAN | P29317: 1mqb 2e8n 2k9y 2kso 2x10 2x11 3c8x 3czu 3fl7 3hei 3hpn 3kka 3mbw 3mx0 3skj 4p2k 4pdo 4trl 5ek7 5i9u 5i9v 5i9w 5i9x 5i9z 5ia0 5ia1 5ia2 5ia3 5ia4 5ia5 5njz 5nk0 5nk1 5nk2 5nk3 5nk4 5nk5 5nk6 5nk7 5nk8 5nk9 5nka 5nkb 5nkc 5nkd 5nke 5nkf 5nkg 5nkh 5nki

(-) Related Entries Specified in the PDB File

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