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(-) Description

Title :  PREFUSION STRUCTURE OF A HUMAN CORONAVIRUS SPIKE PROTEIN
 
Authors :  R. N. Kirchdoerfer, C. A. Cottrell, N. Wang, J. Pallesen, H. M. Yassine, H. L. Turner, K. S. Corbett, B. S. Graham, J. S. Mclellan, A. B. Ward
Date :  03 Feb 16  (Deposition) - 02 Mar 16  (Release) - 13 Apr 16  (Revision)
Method :  ELECTRON MICROSCOPY
Resolution :  4.04
Chains :  Asym./Biol. Unit :  A,B,C
Keywords :  Coronavirus, Glycoprotein, Prefusion, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. N. Kirchdoerfer, C. A. Cottrell, N. Wang, J. Pallesen, H. M. Yassine H. L. Turner, K. S. Corbett, B. S. Graham, J. S. Mclellan, A. B. Ward
Pre-Fusion Structure Of A Human Coronavirus Spike Protein.
Nature V. 531 118 2016
PubMed-ID: 26935699  |  Reference-DOI: 10.1038/NATURE17200

(-) Compounds

Molecule 1 - SPIKE GLYCOPROTEIN, ENVELOPE GLYCOPROTEIN CHIMERA
    Chains: A, B, C
    Engineered: YES
    Expression System: HOMO SAPIENS
    Expression System Cell Line: FREESTYLE 293F
    Expression System Common: HUMAN
    Expression System Plasmid: PVRC-8400
    Expression System Taxid: 9606
    Expression System Vector Type: PLASMID
    Gene: S, 3
    Mutation: YES
    Organism Common: HCOV-HKU1
    Organism Scientific: HUMAN CORONAVIRUS HKU1 (ISOLATE N5), HUMAN IMMUNODEFICIENCY VIRUS 1
    Organism Taxid: 443241, 11676
    Strain: ISOLATE N5
    Synonym: HKU1 PREFUSION SPIKE PROTEIN, S GLYCOPROTEIN, E2, PEPLOMER PROTEIN

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit : ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5I08)

(-) Sites  (0, 0)

(no "Site" information available for 5I08)

(-) SS Bonds  (45, 45)

Asymmetric/Biological Unit
No.Residues
1A:20 -A:156
2A:151 -A:183
3A:163 -A:242
4A:282 -A:292
5A:327 -A:352
6A:370 -A:423
7A:382 -A:603
8A:580 -A:586
9A:619 -A:672
10A:697 -A:719
11A:734 -A:743
12A:814 -A:836
13A:819 -A:825
14A:925 -A:936
15A:1113 -A:1124
16B:20 -B:156
17B:151 -B:183
18B:163 -B:242
19B:282 -B:292
20B:327 -B:352
21B:370 -B:423
22B:382 -B:603
23B:580 -B:586
24B:619 -B:672
25B:697 -B:719
26B:734 -B:743
27B:814 -B:836
28B:819 -B:825
29B:925 -B:936
30B:1113 -B:1124
31C:20 -C:156
32C:151 -C:183
33C:163 -C:242
34C:282 -C:292
35C:327 -C:352
36C:370 -C:423
37C:382 -C:603
38C:580 -C:586
39C:619 -C:672
40C:697 -C:719
41C:734 -C:743
42C:814 -C:836
43C:819 -C:825
44C:925 -C:936
45C:1113 -C:1124

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5I08)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5I08)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5I08)

(-) Exons   (0, 0)

(no "Exon" information available for 5I08)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:958
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........ee.......eeeeee..............ee...eeeeeeeee.....eeee........ee.hhhh...eee...eeeeeee...ee....ee.....eeee........eeeeeee..eeeeeee...............................eeeeeeee......eeeeeeeee..eeeeeee......eeeeeee......eeee..........hhhhh...eeeee.eeeeeeeee.....eeeeehhhhhhhhhhhhhhh.......eeee..eee........hhhhhhh..eee.hhhheeeee...eehhhhhhhh.eeeeeeee..hhhhhhhh....eeeeeee....hhhhhh...................eeeeeeeee....eee..................eee.......................eee.....eeeeeeeeee........ee...............eeeee..eeeeeeeee...........eeee..eeeeeee......eeeee......eeee.....eeeee..hhhhhhhh...ee...eee.....................eeee...eeee.........eeeee.......eeee..........hhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhh...hhhhhhhhhhh.........hhhhhhhh.eeee....hhhhhhhhhhhhhhhhhh.........hhhhhhhhhhh......hhhhhh.hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...................eeeeeee..eeeeeeee Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5i08 A   15 IGDFNCTNSFINDYNKTIPRISEDVVDVSLGLGTYYVLNRVYLNTTLLFTGYFPKSGANFRDLALKGSIYLSTLWYKPPFLSDFNNGIFSKVKNTKLYVNNTLYSEFSTIVIGSVFVNTSYTIVVQPHNGILEITACQYTMCEYPHTVCKSKGSIRNESWHIDSSEPLCLFKKNFTYNVSADWLYFHFYQERGVFYAYYADVGMPTTFLFSLYLGTILSHYYVMPLTCNAISSNTDNETLEYWVTPLSRRQYLLNFDEHGVITNAVDCSSSFLSEIQCKTQSFAPNTGVYDLSTVYRRIPNLPDCDIDNWLNNVSVPSPLNWERRIFSNCNFNLSTLLRLVHVDSFSCNNLDKSKIFGSCFNSITVDKFAIPNRRRDDLQLGSSGFLQSSNYKIDISSSSCQLYYSLPLVNVTINNFNPSSWNRRYGFGSFNLSSYDVVYSDHCFSVNSDFCPCFLGWSFDSCISNNRCNIFSNFIFNGINSGTTCSNDLLYSNTEISTGVCVNYDLYGITGQGIFKEVSAAYYNNWQNLLYDSNGNIIGFKDFLTNKTYTILPCYSGRVSAAFYQNPALLYRNLKCSYVLNNIFYFDSYLGCVLNAVNLTSYSVSSCDLRMGSGFCIDYPYRFVTFEPFNNFTIAGHEEFIQTSSPKVTIDCSAFVCSNYAACHDLLSEYGTFCDNINSILNEVNDLLDITQLQVANALMQGVTLSSNLNTLLEDLLFNKVKLSDVGFVEAYNNCTGGSEIRDLLCVQSFNGIKVLPPILSETQISGYTTAATVAAMFPPWSAAAGVPFSLNVQYRINGLGVTMDVLNKNQKLIANAFNKALLSIQNGFTATNSALAKIQSVVNANAQALNSLLQQLFNKFGAISSSLQEILSRLDNLEAQVQIDRLINGRLTALNAYVSQQLSDITLIKAGASRAIEKVNECVKSQSPRINFCGNGNHILSLVQNAPYGLLFIHFS 1147
                                    24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304  ||   322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472   ||  577       587       597       607       617       627       637       647       657       667       677      |690       700   ||  716       726       736       746|      770||     801       811       821       831       841       851       861       871 ||    909       919       929       939       949       959       969       979       989       999      1009      1019      1029      1039      1049      1059      1069      1079      1089      1099      1109      1119      1129      1139        
                                                                                                                                                                                                                                                                                                                              307|                                                                                                                                                             476|                                                                                                             684|             704|                                746|       771|                                                                             873|                                                                                                                                                                                                                                                     
                                                                                                                                                                                                                                                                                                                               316                                                                                                                                                              572                                                                                                              688              711                                 761        793                                                                              902                                                                                                                                                                                                                                                     


Chain B from PDB  Type:PROTEIN  Length:958
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........ee.......eeeeee..............ee...eeeeeeeee.....eeee........ee.hhhh...eee...eeeeeee...ee....ee.....eeee........eeeeeee..eeeeeee...............................eeeeeeee......eeeeeeeee..eeeeeee......eeeeeee......eeee..........hhhhh...eeeee.eeeeeeeee.....eeeeehhhhhhhhhhhhhhh.......eeee..eee........hhhhhhh..eee.hhhheeeee...eehhhhhhhh.eeeeeeee..hhhhhhhh....eeeeeee....hhhhhh...................eeeeeeeee....eee..................eee.......................eee.....eeeeeeeeee........ee...............eeeee..eeeeeeeee...........eeee..eeeeeee......eeeee......eeee.....eeeee..hhhhhhhh...ee...eee.....................eeee...eeee.........eeeee.......eeee..........hhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhh...hhhhhhhhhhh.........hhhhhhhh.eeee....hhhhhhhhhhhhhhhhhh.........hhhhhhhhhhh......hhhhhh.hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...................eeeeeee..eeeeeeee Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5i08 B   15 IGDFNCTNSFINDYNKTIPRISEDVVDVSLGLGTYYVLNRVYLNTTLLFTGYFPKSGANFRDLALKGSIYLSTLWYKPPFLSDFNNGIFSKVKNTKLYVNNTLYSEFSTIVIGSVFVNTSYTIVVQPHNGILEITACQYTMCEYPHTVCKSKGSIRNESWHIDSSEPLCLFKKNFTYNVSADWLYFHFYQERGVFYAYYADVGMPTTFLFSLYLGTILSHYYVMPLTCNAISSNTDNETLEYWVTPLSRRQYLLNFDEHGVITNAVDCSSSFLSEIQCKTQSFAPNTGVYDLSTVYRRIPNLPDCDIDNWLNNVSVPSPLNWERRIFSNCNFNLSTLLRLVHVDSFSCNNLDKSKIFGSCFNSITVDKFAIPNRRRDDLQLGSSGFLQSSNYKIDISSSSCQLYYSLPLVNVTINNFNPSSWNRRYGFGSFNLSSYDVVYSDHCFSVNSDFCPCFLGWSFDSCISNNRCNIFSNFIFNGINSGTTCSNDLLYSNTEISTGVCVNYDLYGITGQGIFKEVSAAYYNNWQNLLYDSNGNIIGFKDFLTNKTYTILPCYSGRVSAAFYQNPALLYRNLKCSYVLNNIFYFDSYLGCVLNAVNLTSYSVSSCDLRMGSGFCIDYPYRFVTFEPFNNFTIAGHEEFIQTSSPKVTIDCSAFVCSNYAACHDLLSEYGTFCDNINSILNEVNDLLDITQLQVANALMQGVTLSSNLNTLLEDLLFNKVKLSDVGFVEAYNNCTGGSEIRDLLCVQSFNGIKVLPPILSETQISGYTTAATVAAMFPPWSAAAGVPFSLNVQYRINGLGVTMDVLNKNQKLIANAFNKALLSIQNGFTATNSALAKIQSVVNANAQALNSLLQQLFNKFGAISSSLQEILSRLDNLEAQVQIDRLINGRLTALNAYVSQQLSDITLIKAGASRAIEKVNECVKSQSPRINFCGNGNHILSLVQNAPYGLLFIHFS 1147
                                    24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304  ||   322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472   ||  577       587       597       607       617       627       637       647       657       667       677      |690       700   ||  716       726       736       746|      770||     801       811       821       831       841       851       861       871 ||    909       919       929       939       949       959       969       979       989       999      1009      1019      1029      1039      1049      1059      1069      1079      1089      1099      1109      1119      1129      1139        
                                                                                                                                                                                                                                                                                                                              307|                                                                                                                                                             476|                                                                                                             684|             704|                                746|       771|                                                                             873|                                                                                                                                                                                                                                                     
                                                                                                                                                                                                                                                                                                                               316                                                                                                                                                              572                                                                                                              688              711                                 761        793                                                                              902                                                                                                                                                                                                                                                     


Chain C from PDB  Type:PROTEIN  Length:958
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........ee.......eeeeee..............ee...eeeeeeeee.....eeee........ee.hhhh...eee...eeeeeee...ee....ee.....eeee........eeeeeee..eeeeeee...............................eeeeeeee......eeeeeeeee..eeeeeee......eeeeeee......eeee..........hhhhh...eeeee.eeeeeeeee.....eeeeehhhhhhhhhhhhhhh.......eeee..eee........hhhhhhh..eee.hhhheeeee...eehhhhhhhh.eeeeeeee..hhhhhhhh....eeeeeee....hhhhhh...................eeeeeeeee....eee..................eee.......................eee.....eeeeeeeeee........ee...............eeeee..eeeeeeeee...........eeee..eeeeeee......eeeee......eeee.....eeeee..hhhhhhhh...ee...eee.....................eeee...eeee.........eeeee.......eeee..........hhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhh...hhhhhhhhhhh.........hhhhhhhh.eeee....hhhhhhhhhhhhhhhhhh.........hhhhhhhhhhh......hhhhhh.hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...................eeeeeee..eeeeeeee Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5i08 C   15 IGDFNCTNSFINDYNKTIPRISEDVVDVSLGLGTYYVLNRVYLNTTLLFTGYFPKSGANFRDLALKGSIYLSTLWYKPPFLSDFNNGIFSKVKNTKLYVNNTLYSEFSTIVIGSVFVNTSYTIVVQPHNGILEITACQYTMCEYPHTVCKSKGSIRNESWHIDSSEPLCLFKKNFTYNVSADWLYFHFYQERGVFYAYYADVGMPTTFLFSLYLGTILSHYYVMPLTCNAISSNTDNETLEYWVTPLSRRQYLLNFDEHGVITNAVDCSSSFLSEIQCKTQSFAPNTGVYDLSTVYRRIPNLPDCDIDNWLNNVSVPSPLNWERRIFSNCNFNLSTLLRLVHVDSFSCNNLDKSKIFGSCFNSITVDKFAIPNRRRDDLQLGSSGFLQSSNYKIDISSSSCQLYYSLPLVNVTINNFNPSSWNRRYGFGSFNLSSYDVVYSDHCFSVNSDFCPCFLGWSFDSCISNNRCNIFSNFIFNGINSGTTCSNDLLYSNTEISTGVCVNYDLYGITGQGIFKEVSAAYYNNWQNLLYDSNGNIIGFKDFLTNKTYTILPCYSGRVSAAFYQNPALLYRNLKCSYVLNNIFYFDSYLGCVLNAVNLTSYSVSSCDLRMGSGFCIDYPYRFVTFEPFNNFTIAGHEEFIQTSSPKVTIDCSAFVCSNYAACHDLLSEYGTFCDNINSILNEVNDLLDITQLQVANALMQGVTLSSNLNTLLEDLLFNKVKLSDVGFVEAYNNCTGGSEIRDLLCVQSFNGIKVLPPILSETQISGYTTAATVAAMFPPWSAAAGVPFSLNVQYRINGLGVTMDVLNKNQKLIANAFNKALLSIQNGFTATNSALAKIQSVVNANAQALNSLLQQLFNKFGAISSSLQEILSRLDNLEAQVQIDRLINGRLTALNAYVSQQLSDITLIKAGASRAIEKVNECVKSQSPRINFCGNGNHILSLVQNAPYGLLFIHFS 1147
                                    24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304  ||   322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472   ||  577       587       597       607       617       627       637       647       657       667       677      |690       700   ||  716       726       736       746|      770||     801       811       821       831       841       851       861       871 ||    909       919       929       939       949       959       969       979       989       999      1009      1019      1029      1039      1049      1059      1069      1079      1089      1099      1109      1119      1129      1139        
                                                                                                                                                                                                                                                                                                                              307|                                                                                                                                                             476|                                                                                                             684|             704|                                746|       771|                                                                             873|                                                                                                                                                                                                                                                     
                                                                                                                                                                                                                                                                                                                               316                                                                                                                                                              572                                                                                                              688              711                                 761        793                                                                              902
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5I08)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5I08)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5I08)

(-) Gene Ontology  (16, 17)

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        M1E1E4_9HIV1 | M1E1E4: 2lp7 2m7w 5u68

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