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(-) Description

Title :  CYCLOALTERNAN-FORMING ENZYME FROM LISTERIA MONOCYTOGENES IN COMPLEX WITH PANOSE
 
Authors :  A. S. Halavaty, S. H. Light, G. Minasov, J. Winsor, S. Grimshaw, L. Shuva S. Peterson, W. F. Anderson, Center For Structural Genomics Of I Diseases (Csgid)
Date :  31 Jan 16  (Deposition) - 25 Jan 17  (Release) - 22 Feb 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym./Biol. Unit :  A
Keywords :  Center For Structural Genomics Of Infectious Diseases, Csgid, Idp05250, Lmo2446, Listeria Monocytogenes Egd-E, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. H. Light, L. A. Cahoon, K. V. Mahasenan, M. Lee, B. Boggess, A. S. Halavaty, S. Mobashery, N. E. Freitag, W. F. Anderson
Transferase Versus Hydrolase: The Role Of Conformational Flexibility In Reaction Specificity.
Structure V. 25 295 2017
PubMed-ID: 28089449  |  Reference-DOI: 10.1016/J.STR.2016.12.007

(-) Compounds

Molecule 1 - ALPHA-XYLOSIDASE
    Chains: A
    EC Number: 3.2.1.177
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG7
    Expression System Strain: BL21 MAGIC
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Gene: YICI_4, ABE87_12155, ARD00_02746
    Organism Scientific: LISTERIA MONOCYTOGENES
    Organism Taxid: 1639
    Synonym: GLYCOSYL HYDROLASE FAMILY 31

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 44)

Asymmetric/Biological Unit (5, 44)
No.NameCountTypeFull Name
1CA1Ligand/IonCALCIUM ION
2CL2Ligand/IonCHLORIDE ION
3GLC6Ligand/IonALPHA-D-GLUCOSE
4MG5Ligand/IonMAGNESIUM ION
5MSE30Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (10, 10)

Asymmetric Unit (10, 10)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASN A:346 , HOH A:1231 , HOH A:1300 , HOH A:1502 , HOH A:1536 , HOH A:2067binding site for residue MG A 1101
02AC2SOFTWAREGLU A:370 , ASP A:372 , ASP A:376 , HOH A:1729 , HOH A:1849 , HOH A:1940binding site for residue MG A 1102
03AC3SOFTWAREHOH A:1412 , HOH A:1967 , HOH A:1976 , HOH A:2080 , HOH A:2191binding site for residue MG A 1103
04AC4SOFTWAREHOH A:1499 , HOH A:2060 , HOH A:2114 , HOH A:2121 , HOH A:2188 , HOH A:2224binding site for residue MG A 1104
05AC5SOFTWAREHOH A:1325 , HOH A:2055 , HOH A:2150binding site for residue MG A 1105
06AC6SOFTWAREGLU A:939 , GLU A:941 , THR A:958 , GLY A:961 , ASP A:1054binding site for residue CA A 1106
07AC7SOFTWAREARG A:991 , ASN A:1024 , THR A:1025 , HOH A:1961binding site for residue CL A 1107
08AC8SOFTWAREILE A:1005 , THR A:1031 , HOH A:1736 , HOH A:1997binding site for residue CL A 1108
09AC9SOFTWAREASN A:418 , GLU A:473 , HIS A:954 , GLY A:965 , ASP A:967 , GLU A:997 , TRP A:1020 , GLY A:1050 , ASN A:1052 , HOH A:1235 , HOH A:1315 , HOH A:1644 , HOH A:1671 , HOH A:1809binding site for Poly-Saccharide residues GLC A 1109 through GLC A 1112
10AD1SOFTWAREASN A:418 , GLU A:473 , ASP A:767 , ASN A:770 , HIS A:774 , TYR A:782 , TYR A:783 , GLU A:941 , THR A:950 , HIS A:954 , THR A:960 , GLY A:965 , ASP A:967 , GLU A:997 , TRP A:1020 , GLY A:1050 , ASN A:1052 , HOH A:1209 , HOH A:1235 , HOH A:1237 , HOH A:1280 , HOH A:1315 , HOH A:1348 , HOH A:1367 , HOH A:1400 , HOH A:1444 , HOH A:1534 , HOH A:1644 , HOH A:1671 , HOH A:1809 , HOH A:1865binding site for Poly-Saccharide residues GLC A 1113 through GLC A 1114

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5HXM)

(-) Cis Peptide Bonds  (5, 5)

Asymmetric/Biological Unit
No.Residues
1Ser A:23 -Pro A:24
2Trp A:40 -Pro A:41
3Gly A:106 -Pro A:107
4Ser A:198 -Pro A:199
5Ser A:665 -Pro A:666

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5HXM)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5HXM)

(-) Exons   (0, 0)

(no "Exon" information available for 5HXM)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:1060
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eee................ee.........eeeeeeee.....eeeeeeeee..ee...ee.eeeeee..eeeeeeeee......eeeeeeeeee.....eeeeeeeee..eeeeeeeeeeeee....eeeeeee.......eeeeeeee..eeeeeee..............eeee...eeeee...eeeeee....eeeeee....eeeee.......eeee.....eeeeeeeee......eeeee...........eeee.......hhhhhh....eeeeeee...eeeee.....eeeee......eeeeeeeeee.....eeeeee...hhhhhhhhhhhhhh.....hhhhh.eeee.....hhhhhhhhhhhhhhh.....eeee..........................hhhhh.......hhhhhhhhhhhh..eeeeee..ee......hhhhhhhhhhhhhh.......................ee....hhhhhhhhhhhhhhhhhh.....eee.................hhhhhh.hhhhhhhhhhhhhhhhhh.....ee.....hhhhh.eee......hhhhhhhhhhhhhhhhhh....ee...........hhhhhhhhhhhhhh...eee.............hhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...eehhhhhh............eee...eee.........eeeeee...eeee.....eee..eeeeee.......eeee...eeeeee..................eeeeee....eeeeeee.hhhh..eeeeeeeeehhh.eeeeee......eeeeee.....eeee..ee.....hhhhhhhh..eeeee....eeeeee......eeeeee......ee.hhheee...ee..........eeee......eeeeeee.....eeeeeeeeee.....eeeeeee..eeeeeee.........eeeeeeeee...eeeeeee........eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5hxm A    1 mDGEYHSPYGDDDLYTVQPTERSPRDPKAGEDVILNITTWPIENGQDVWVEWTKNGVAQENVTAAYDYNSGNNTYWKADLGKFEKGDEITYTTKGSTNGGTAYESGPFTFYVTDWEYVQDVTSVVDNGDSITLNmTATAGDFSPKLYLSFEDLDTLRmELSPTGKETGHAGKSGYTVEDTAEKVTVTTEDLSIEIQKSPYRmEVHQADGTLLTSEYTTANSLGWLTDGKNVINQYQNNFmTPSDEAFYGFGERYDTINQRGKDVETYVYNEYQDQAQTERTYLAVPFFVSANKYGmYVNSDFHSQFQmASKVEDKYSFVLDNDGDmTNmLDYYVISGKDQNDIVNNYTDITGKTTLLPKWAFGLWmSANEWDRESDVSSALSNAKANDIPATGFVLEQWSDEETYYIWNNATYTAKKNGEAFSYDDFTFNGKWTDPKGmVDSVHDAGmNIVLWQVPVLKDDGTVYEQRDNDEEYmISQGYSADDGTGAPYRVPASQWFGNGILLDFTNKDAVDWWTSQREYLLTEVGIDGFKTDGGEmVWGRDTTFSNGEKGQEmRNRYPTDYVSSYFDFAKSINPEAVSFSRSGTSGAQKSGIYWSGDQTSTFDSFQASLKAGLSASTSGVSYWAWDmAGFTGDYPTAELYKRATAmAAFAPImQFHSEKSDPSPSEERSPWNAVARTGDETILPTFQKYLYTRmNLLPYIYTAAKDTADNGKSmmRQmAmDYPEDVNARDLDEQYmFGDDLLVAPIVQEGQTEKEVYLPEGEWVDIWNGGVHPGGETISYYADVDTLPVFAKAGAIIPmNmTDGYQLGQNVGNDLKSYDNLTFRVYPSGDSEYSFYDDVNGGEmRDISVSEDFANEKVSVDLPAmADETTmQVFSTEPTSVTIDGADVAKADTLDAFNEATTGYYYDTVQNLTYVKAAAKDAKQAIVLNGVNHAPYEAEFGHLTNVTTASDHAGYTGTGFVAGFDAEKEAVEFDIDAVDGASDYTmEVRYSAGVEDATRTVYINGKKQQITLPKTANWDTWNTVEVPVTLQAGNNQVVFDFEADDTAGINFDHVVIKK 1060
                            |       10        20        30        40        50        60        70        80        90       100       110       120       130    |  140       150       160       170       180       190       200 |     210       220       230       240       250       260       270       280       290     | 300       310       320     | 330       340       350       360     | 370       380       390       400       410       420       430       440       450       460       470    |  480       490       500       510       520       530       540       550    |  560       570       580       590       600       610       620       630       640       650    |  660       670       680       690     | 700       710     ||720 |     730       740       750       760       770       780       790       800| |    810       820       830       840     | 850       860      |870  |    880       890       900       910       920       930       940       950       960       970       980       990      1000      1010      1020      1030      1040      1050      1060
                            |                                                                                                                                   135-MSE                158-MSE                                     202-MSE                               240-MSE                                                 296-MSE     308-MSE           326-MSE                                 366-MSE                                                                  439-MSE  448-MSE                    475-MSE                                                        538-MSE          555-MSE                                                                   629-MSE            648-MSE  |                                      696-MSE             716-MSE |             738-MSE                                                        801-MSE                                      846-MSE              867-MSE |                                                                                                                988-MSE                                                                    
                            1-MSE                                                                                                                                                                                                                                                                                                                                 329-MSE                                                                                                                                                                                                                                                                                                                               655-MSE                                                       717-MSE|                                                                              803-MSE                                                               873-MSE                                                                                                                                                                                       
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         720-MSE                                                                                                                                                                                                                                                                                                                                                
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           722-MSE
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5HXM)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5HXM)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5HXM)

(-) Gene Ontology  (8, 8)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q8Y4J2_LISMO | Q8Y4J2: 4kmq 4kwu 5f7u 5hpo 5i0d

(-) Related Entries Specified in the PDB File

4kmq 1.9 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF UNCHARACTERIZED PROTEIN LMO2446 FROM LISTERIA MONOCYTOGENES EGD-E
4kwu 1.9 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF UNCHARACTERIZED PROTEIN LMO2446 FROM LISTERIA MONOCYTOGENES EGD-E IN COMPLEX WITH ALPHA-D-GLUCOSE, BETA-D-GLUCOSE, MAGNESIUM AND CALCIUM
5hpo CYCLOALTERNAN-FORMING ENZYME FROM LISTERIA MONOCYTOGENES IN COMPLEX WITH MALTOPENTAOSE RELATED ID: CSGID-IDP05250 RELATED DB: TARGETTRACK