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(-) Description

Title :  ERWINIA CHRYSANTHEMI L-ASPARAGINASE + GLUTAMIC ACID
 
Authors :  H. A. Nguyen, A. Lavie
Date :  28 Jan 16  (Deposition) - 06 Apr 16  (Release) - 06 Apr 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.70
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  L-Asparaginase, Erwinia Chrysanthemum, Glutamic Acid, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. A. Nguyen, Y. Su, A. Lavie
Structural Insight Into Substrate Selectivity Of Erwinia Chrysanthemi L-Asparaginase.
Biochemistry V. 55 1246 2016
PubMed-ID: 26855287  |  Reference-DOI: 10.1021/ACS.BIOCHEM.5B01351

(-) Compounds

Molecule 1 - L-ASPARAGINASE
    Chains: A, B, C, D
    EC Number: 3.5.1.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET-14B MODIFIED
    Expression System Strain: C41
    Expression System Taxid: 562
    Gene: ANSB, ASN
    Organism Common: PECTOBACTERIUM CHRYSANTHEMI
    Organism Scientific: DICKEYA CHRYSANTHEMI
    Organism Taxid: 556
    Synonym: L-ASNASE,L-ASPARAGINE AMIDOHYDROLASE

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

Asymmetric/Biological Unit (1, 4)
No.NameCountTypeFull Name
1GLU4Mod. Amino AcidGLUTAMIC ACID

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:14 , THR A:15 , ALA A:61 , SER A:62 , GLU A:63 , GLY A:94 , THR A:95 , ASP A:96 , ALA A:120 , HOH A:519 , HOH A:520 , HOH A:542 , HOH A:563 , SER B:254binding site for residue GLU A 400
2AC2SOFTWARESER A:254 , GLY B:14 , THR B:15 , ALA B:61 , SER B:62 , GLU B:63 , GLY B:94 , THR B:95 , ASP B:96 , ALA B:120 , HOH B:553 , HOH B:594binding site for residue GLU B 400
3AC3SOFTWAREGLY C:14 , THR C:15 , ALA C:61 , SER C:62 , GLU C:63 , GLY C:94 , THR C:95 , ASP C:96 , ALA C:120 , HOH C:546 , HOH C:569 , HOH C:638 , SER D:254binding site for residue GLU C 400
4AC4SOFTWARESER C:254 , GLY D:14 , THR D:15 , ILE D:16 , TYR D:29 , ALA D:61 , SER D:62 , GLU D:63 , GLY D:94 , THR D:95 , ASP D:96 , ALA D:120 , HOH D:501 , HOH D:513 , HOH D:517binding site for residue GLU D 400

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5HW0)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5HW0)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5HW0)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5HW0)

(-) Exons   (0, 0)

(no "Exon" information available for 5HW0)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:312
                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeeee.........hhhhhhhhhhhhhhh.eeeeee....hhhhhhhhhhhhhhhhhhhhhh.....eeeee....hhhhhhhhhhhhh.....eeee...........hhhhhhhhhhhhhhhhhhh....eeee..eeee....ee........ee.......eeee..eeee.eee...hhhhh............eeeee.....hhhhhhhhhhh...eeeeee......hhhhhhhhhhhhhh..eeeeee...............ee....hhhhhhhhhhhhhh...hhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5hw0 A   3 KLPNIVILATGGTIAGALGVDTLINAVPEVKKLANVKGEQFSNMASENMTGDVVLKLSQRVNELLARDDVDGVVITHGTDTVEESAYFLHLTVKSDKPVVFVAAMRPATAISADGPMNLLEAVRVAGDKQSRGRGVMVVLNDRIGSARYITKTNASTLDTFKANEEGYLGVIIGNRIYYQNRIDKLHTTRSVFDVRGLTSLPKVDILYGYQDDPEYLYDAAIQHGVKGIVYAGMGAGSVSVRGIAGMRKAMEKGVVVIRSTRTGNGIVPPDEELPGLVSDSLNPAHARILLMLALTRTSDPKVIQEYFHTYE 400
                                    12    ||  36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326||
                                         17|                                                                                                                                                                                                                                                                                                    327|
                                          32                                                                                                                                                                                                                                                                                                     400


Chain B from PDB  Type:PROTEIN  Length:309
                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeee.....hhhhhhhhhhhhhh.eeeeeeeeeehhhhhhhhhhhhhhhhhhhhhh.....eeeee....hhhhhhhhhhhhh.....eeee...........hhhhhhhhhhhhhhhhhhh....eeee..eeee....ee........ee.......eeee..eeee.eee...hhhhh............eeeee......hhhhhhhhhh...eeeeee......hhhhhhhhhhhhhh..eeeeee...............ee....hhhhhhhhhhhhhh...hhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5hw0 B   3 KLPNIVILATGGTIAGVDTLINAVPEVKKLANVKGEQFSNMASENMTGDVVLKLSQRVNELLARDDVDGVVITHGTDTVEESAYFLHLTVKSDKPVVFVAAMRPATAISADGPMNLLEAVRVAGDKQSRGRGVMVVLNDRIGSARYITKTNASTLDTFKANEEGYLGVIIGNRIYYQNRIDKLHTTRSVFDVRGLTSLPKVDILYGYQDDPEYLYDAAIQHGVKGIVYAGMGAGSVSVRGIAGMRKAMEKGVVVIRSTRTGNGIVPPDEELPGLVSDSLNPAHARILLMLALTRTSDPKVIQEYFHTYE 400
                                    12    ||  39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       ||
                                         17|                                                                                                                                                                                                                                                                                                 327|
                                          35                                                                                                                                                                                                                                                                                                  400


Chain C from PDB  Type:PROTEIN  Length:312
                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeeeeee.hhhh..hhhhhhhhh.hhhhhheeeeeeeeeehhhhhhhhhhhhhhhhhhhhhh.....eeeee....hhhhhhhhhhhhh.....eeee...........hhhhhhhhhhhhhhhhhhh....eeee..eeee....ee........ee.......eeee..eeee.eee...hhhhh............eeeee......hhhhhhhhhh...eeeeee......hhhhhhhhhhhhhh..eeeeee...............ee....hhhhhhhhhhhhhh...hhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5hw0 C   3 KLPNIVILATGGTIAGALGVDTLINAVPEVKKLANVKGEQFSNMASENMTGDVVLKLSQRVNELLARDDVDGVVITHGTDTVEESAYFLHLTVKSDKPVVFVAAMRPATAISADGPMNLLEAVRVAGDKQSRGRGVMVVLNDRIGSARYITKTNASTLDTFKANEEGYLGVIIGNRIYYQNRIDKLHTTRSVFDVRGLTSLPKVDILYGYQDDPEYLYDAAIQHGVKGIVYAGMGAGSVSVRGIAGMRKAMEKGVVVIRSTRTGNGIVPPDEELPGLVSDSLNPAHARILLMLALTRTSDPKVIQEYFHTYE 400
                                    12     || 36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326||
                                          18|                                                                                                                                                                                                                                                                                                   327|
                                           33                                                                                                                                                                                                                                                                                                    400


Chain D from PDB  Type:PROTEIN  Length:326
                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeee.hhhh................hhhhhhhhh.hhhhhheeeeeeeeeehhhhhhhhhhhhhhhhhhhhhh.....eeeee....hhhhhhhhhhhhh.....eeee...........hhhhhhhhhhhhhhhhhhh....eeee..eeee....ee........ee.......eeee..eeee.eee...hhhhh............eeeee......hhhhhhhhhh...eeeeee......hhhhhhhhhhhhhh..eeeeee...............ee....hhhhhhhhhhhhhh...hhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5hw0 D   3 KLPNIVILATGGTIAGSAATGTQTTGYKAGALGVDTLINAVPEVKKLANVKGEQFSNMASENMTGDVVLKLSQRVNELLARDDVDGVVITHGTDTVEESAYFLHLTVKSDKPVVFVAAMRPATAISADGPMNLLEAVRVAGDKQSRGRGVMVVLNDRIGSARYITKTNASTLDTFKANEEGYLGVIIGNRIYYQNRIDKLHTTRSVFDVRGLTSLPKVDILYGYQDDPEYLYDAAIQHGVKGIVYAGMGAGSVSVRGIAGMRKAMEKGVVVIRSTRTGNGIVPPDEELPGLVSDSLNPAHARILLMLALTRTSDPKVIQEYFHTYE 400
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322    ||
                                                                                                                                                                                                                                                                                                                                                              327|
                                                                                                                                                                                                                                                                                                                                                               400
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5HW0)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5HW0)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5HW0)

(-) Gene Ontology  (4, 4)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ASPG_DICCH | P06608: 1hfj 1hfk 1hfw 1hg0 1hg1 1jsl 1jsr 1o7j 5f52 5i3z 5i48 5i4b

(-) Related Entries Specified in the PDB File

5f52 5F52 IS COMPLEXED WITH LIGAND ASP