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(-) Description

Title :  FULL LENGTH WILD-TYPE OPEN-FORM SODIUM CHANNEL NAVMS
 
Authors :  A. Sula, J. E. Booker, C. E. Naylor, B. A. Wallace
Date :  28 Jan 16  (Deposition) - 01 Mar 17  (Release) - 01 Mar 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.45
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (4x)
Keywords :  Integral Membrane Full Length Voltage Gated Sodium Channel Transport, Transport Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Sula, J. Booker, L. C. Ng, C. E. Naylor, P. G. Decaen, B. A. Wallace
The Complete Structure Of An Activated Open Sodium Channel.
Nat Commun V. 8 14205 2017
PubMed-ID: 28205548  |  Reference-DOI: 10.1038/NCOMMS14205
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - ION TRANSPORT PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: CD41
    Expression System Taxid: 562
    Gene: MMC1_0798
    Organism Scientific: MAGNETOCOCCUS MARINUS (STRAIN ATCC BAA-1437 / JCM 17883 / MC-1)
    Organism Taxid: 156889
    Strain: ATCC BAA-1437 / JCM 17883 / MC-1

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (4x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 8)

Asymmetric Unit (5, 8)
No.NameCountTypeFull Name
112P1Ligand/IonDODECAETHYLENE GLYCOL
22CV1Ligand/IonHEGA-10
3EDO1Ligand/Ion1,2-ETHANEDIOL
4MES2Ligand/Ion2-(N-MORPHOLINO)-ETHANESULFONIC ACID
5NA3Ligand/IonSODIUM ION
Biological Unit 1 (4, 20)
No.NameCountTypeFull Name
112P4Ligand/IonDODECAETHYLENE GLYCOL
22CV4Ligand/IonHEGA-10
3EDO4Ligand/Ion1,2-ETHANEDIOL
4MES8Ligand/Ion2-(N-MORPHOLINO)-ETHANESULFONIC ACID
5NA-1Ligand/IonSODIUM ION

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWARENA A:303binding site for residue NA A 302
2AC2SOFTWARENA A:302binding site for residue NA A 303
3AC3SOFTWARESER A:165 , LYS A:166 , MET A:189 , ASN A:194 , TRP A:196 , HOH A:425 , HOH A:431binding site for residue 2CV A 304
4AC4SOFTWAREMET A:108 , MET A:124 , TYR A:153 , HIS A:192 , PRO A:193 , ASN A:194 , PHE A:198 , EDO A:306binding site for residue 12P A 305
5AC5SOFTWARE12P A:305binding site for residue EDO A 306
6AC6SOFTWAREGLY A:76 , TRP A:77 , LEU A:125binding site for residue MES A 307
7AC7SOFTWAREMET A:204binding site for residue MES A 308

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5HVX)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Arg A:70 -Gly A:71

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5HVX)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5HVX)

(-) Exons   (0, 0)

(no "Exon" information available for 5HVX)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:256
                                                                                                                                                                                                                                                                                                
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh.......hhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5hvx A  -1 SHMSRKIRDLIESKRFQNVITAIIVLNGAVLGLLTDTTLSASSQNLLERVDQLCLTIFIVEISLKIYAYGVRGFFRSGWNLFDFVIVAIALMPRTFRIFRVMRLVSVIPTMRRVVQGMLLALPGVGSVAALLTVVFYIAAVMATNLYGATFPEWFGDLSKSLYTLFQVMTLESWSMGIVRPVMNVHPNAWVFFIPFIMLTTFTVLNLFIGIIVDAMAITKEQEEEAKTGHHQEPISQTLLHLGDRLDRIEKQLAQN 262
                                     8        18        28        38        48        58        68        78        88  ||   106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256      
                                                                                                                       91|                                                                                                                                                                  
                                                                                                                       100
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5HVX)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5HVX)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5HVX)

(-) Gene Ontology  (7, 7)

Asymmetric Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Arg A:70 - Gly A:71   [ RasMol ]  
 
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  5hvx
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 Related Entries

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UniProtKB/TrEMBL
        A0L5S6_MAGMM | A0L5S6: 3zjz 4cbc 4f4l 4oxs 4p2z 4p30 4p9o 4p9p 4pa3 4pa4 4pa6 4pa7 4pa9 4x88 4x89 4x8a 5bzb 5hvd

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 5HVX)