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(-) Description

Title :  CRYSTAL STRUCTURE OF NADC FROM STREPTOCOCCUS PYOGENES
 
Authors :  W. T. Booth, M. Chruszcz
Date :  27 Jan 16  (Deposition) - 25 Jan 17  (Release) - 12 Jul 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.42
Chains :  Asym. Unit :  A,B,C,E,F,H
Biol. Unit 1:  A,C,E  (2x)
Biol. Unit 2:  B,F,H  (2x)
Keywords :  Quinolinate Phosphoribosyltransferase, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  W. T. Booth, T. L. Morris, D. P. Mysona, M. J. Shah, L. K. Taylor, T. W. Karlin, K. Clary, K. A. Majorek, L. R. Offermann, M. Chruszcz
Streptococcus Pyogenes Quinolinate-Salvage Pathway - Structural And Functional Studies Of Quinolinate Phosphoribosyl Transferase And Nh3 -Dependent Nad(+) Synthetase.
Febs J. 2017
PubMed-ID: 28618168  |  Reference-DOI: 10.1111/FEBS.14136

(-) Compounds

Molecule 1 - NICOTINATE-NUCLEOTIDE PYROPHOSPHORYLASE (CARBOXYLATING)
    Chains: A, B, C, E, F, H
    EC Number: 2.4.2.19
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PJEXPRESS411
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Fragment: UNP RESIDUES 10-299
    Gene: NADC, MGAS10750_SPY1186
    Organism Scientific: STREPTOCOCCUS PYOGENES SEROTYPE M4 (STRAIN MGAS10750)
    Organism Taxid: 370554
    Strain: MGAS10750

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCEFH
Biological Unit 1 (2x): A CE  
Biological Unit 2 (2x):  B  FH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 17)

Asymmetric Unit (1, 17)
No.NameCountTypeFull Name
1SO417Ligand/IonSULFATE ION
Biological Unit 1 (1, 18)
No.NameCountTypeFull Name
1SO418Ligand/IonSULFATE ION
Biological Unit 2 (1, 16)
No.NameCountTypeFull Name
1SO416Ligand/IonSULFATE ION

(-) Sites  (16, 16)

Asymmetric Unit (16, 16)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREARG A:243binding site for residue SO4 A 301
02AC2SOFTWAREARG A:243 , ARG E:191binding site for residue SO4 A 302
03AC3SOFTWARELYS A:141 , GLY A:269 , SER A:270binding site for residue SO4 A 303
04AC4SOFTWAREARG A:140 , ARG A:163binding site for residue SO4 A 304
05AC5SOFTWARETHR B:139 , ARG B:140 , ARG B:163 , MET B:171binding site for residue SO4 B 301
06AC6SOFTWARELYS B:141 , GLY B:269 , SER B:270 , HIS B:273binding site for residue SO4 B 302
07AC7SOFTWAREARG C:106 , LYS E:141 , LYS E:173binding site for residue SO4 C 301
08AC8SOFTWARESER C:281 , LYS C:283binding site for residue SO4 C 302
09AC9SOFTWARESER C:268 , GLY C:269 , SER C:270binding site for residue SO4 C 303
10AD1SOFTWARETHR E:139 , ARG E:140 , HIS E:162 , ARG E:163 , MET E:171binding site for residue SO4 E 301
11AD2SOFTWARELYS E:141 , GLY E:269binding site for residue SO4 E 302
12AD3SOFTWARETHR F:139 , ARG F:140 , ARG F:163binding site for residue SO4 F 301
13AD4SOFTWARELYS F:141 , GLY F:269 , SER F:270binding site for residue SO4 F 302
14AD5SOFTWAREARG H:140 , ARG H:163binding site for residue SO4 H 301
15AD6SOFTWARELYS H:141 , GLY H:269 , HIS H:273binding site for residue SO4 H 302
16AD7SOFTWAREARG H:106binding site for residue SO4 H 303

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5HUP)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5HUP)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5HUP)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5HUP)

(-) Exons   (0, 0)

(no "Exon" information available for 5HUP)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:285
                                                                                                                                                                                                                                                                                                                             
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhh...hhhhhhhh....eeeeeeee...ee..hhhhhhhhhhhhh...eee.........ee...eeeeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eee........hhhhhhhhhhhh............eeehhhhhhhhh.hhhhhhhhhhhh.....eeeee.hhhhhhhhhhh...eeeee..hhhhhhhhhhhhh...eeeee......hhhhhh.....eee.hhhhhh.....eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5hup A   5 STDLTPFQIDDTLKAALREDVHSEDYSTNAIFDHHGQAKVSLFAKEAGVLAGLTVFQRVFTLFDAEVTFQNPHQFKDGDRLTSGDLVLEIIGSVRSLLTCERVALNFLQHLSGIASMTAAYVEALGDDRIKVFDTRKTTPNLRLFEKYAVRVGGGYNHRFNLSDAIMLKDNHIAAVGSVQKAIAQARAYAPFVKMVEVEVESLAAAEEAAAAGVDIIMLDNMSLEQIEQAITLIAGRSRIECSGNIDMTTISRFRGLAIDYVSSGSLTHSAKSLDFSMKGLTYLD 289
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284     


Chain B from PDB  Type:PROTEIN  Length:285
                                                                                                                                                                                                                                                                                                                             
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhh...hhhhhhhh....eeeeeeee...ee..hhhhhhhhhhhhh...eee.........ee...eeeeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eee........hhhhhhhhhhhh............eeehhhhhhhhh.hhhhhhhhhhhh.....eeeee.hhhhhhhhhhh...eeeee..hhhhhhhhhhhhh...eeeee......hhhhhh.....eee.hhhhhh.....eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5hup B   5 STDLTPFQIDDTLKAALREDVHSEDYSTNAIFDHHGQAKVSLFAKEAGVLAGLTVFQRVFTLFDAEVTFQNPHQFKDGDRLTSGDLVLEIIGSVRSLLTCERVALNFLQHLSGIASMTAAYVEALGDDRIKVFDTRKTTPNLRLFEKYAVRVGGGYNHRFNLSDAIMLKDNHIAAVGSVQKAIAQARAYAPFVKMVEVEVESLAAAEEAAAAGVDIIMLDNMSLEQIEQAITLIAGRSRIECSGNIDMTTISRFRGLAIDYVSSGSLTHSAKSLDFSMKGLTYLD 289
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284     


Chain C from PDB  Type:PROTEIN  Length:280
                                                                                                                                                                                                                                                                                                                        
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhh...hhhhhh.......eeeeeee...ee..hhhhhhhhhhhhh...eee.........ee...eeeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eee........hhhhhhhhhhhh............eeehhhhhhhhh.hhhhhhhhhhhh.....eeeee.hhhhhhhhh...eeeee..hhhhhhhhhhhhh...eeeee.....hhhhhhh.....eee.hhhhhh.....eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5hup C   8 LTPFQIDDTLKAALREDVHSEDYSTNAIFDHHGQAKVSLFAKEAGVLAGLTVFQRVFTLFDAEVTFQNPHQFKDGDRLTSGDLVLEIIGSVRSLLTCERVALNFLQHLSGIASMTAAYVEALGDDRIKVFDTRKTTPNLRLFEKYAVRVGGGYNHRFNLSDAIMLKDNHIAAVGSVQKAIAQARAYAPFVKMVEVEVESLAAAEEAAGVDIIMLDNMSLEQIEQAITLIAGRSRIECSGNIDMTTISRFRGLAIDYVSSGSLTHSAKSLDFSMKGLTYLD 289
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207      |219       229       239       249       259       269       279       289
                                                                                                                                                                                                                                        214|                                                                        
                                                                                                                                                                                                                                         217                                                                        


Chain E from PDB  Type:PROTEIN  Length:284
                                                                                                                                                                                                                                                                                                                            
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhh...hhhhhhhh....eeeeeeee...ee..hhhhhhhhhhhhh...eee.........ee...eeeeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eee........hhhhhhhhhhhh............eeehhhhhhhhhhhhhhhhhhhhhh.....eeeee.hhhhhhhhhhh...eeeee..hhhhhhhhhhhhh...eeeee......hhhhhh.....eee.hhhhhh.....eeeeeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5hup E   5 STDLTPFQIDDTLKAALREDVHSEDYSTNAIFDHHGQAKVSLFAKEAGVLAGLTVFQRVFTLFDAEVTFQNPHQFKDGDRLTSGDLVLEIIGSVRSLLTCERVALNFLQHLSGIASMTAAYVEALGDDRIKVFDTRKTTPNLRLFEKYAVRVGGGYNHRFNLSDAIMLKDNHIAAVGSVQKAIAQARAYAPFVKMVEVEVESLAAAEEAAAAGVDIIMLDNMSLEQIEQAITLIAGRSRIECSGNIDMTTISRFRGLAIDYVSSGSLTHSAKSLDFSMKGLTYL 288
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284    


Chain F from PDB  Type:PROTEIN  Length:284
                                                                                                                                                                                                                                                                                                                            
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhh...hhhhhhhh....eeeeeeee...ee..hhhhhhhhhhhhh...eee.........ee...eeeeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eee........hhhhhhhhhhhh............eeehhhhhhhhh.hhhhhhhhhhhh.....eeeee.hhhhhhhhhhh...eeeee..hhhhhhhhhhhhh...eeeee......hhhhhh.....eee.hhhhhh.....eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5hup F   6 TDLTPFQIDDTLKAALREDVHSEDYSTNAIFDHHGQAKVSLFAKEAGVLAGLTVFQRVFTLFDAEVTFQNPHQFKDGDRLTSGDLVLEIIGSVRSLLTCERVALNFLQHLSGIASMTAAYVEALGDDRIKVFDTRKTTPNLRLFEKYAVRVGGGYNHRFNLSDAIMLKDNHIAAVGSVQKAIAQARAYAPFVKMVEVEVESLAAAEEAAAAGVDIIMLDNMSLEQIEQAITLIAGRSRIECSGNIDMTTISRFRGLAIDYVSSGSLTHSAKSLDFSMKGLTYLD 289
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285    


Chain H from PDB  Type:PROTEIN  Length:285
                                                                                                                                                                                                                                                                                                                             
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhh...hhhhhh.......eeeeeee...ee..hhhhhhhhhhhhh...eee.........ee...eeeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeee.......hhhhhhhhhhhh............eeehhhhhhhhh.hhhhhhhhhhhh.....eeeee.hhhhhhhhhhh...eeeee..hhhhhhhhhhhhh...eeeee......hhhhhh.....eeeehhhhhh.....eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5hup H   5 STDLTPFQIDDTLKAALREDVHSEDYSTNAIFDHHGQAKVSLFAKEAGVLAGLTVFQRVFTLFDAEVTFQNPHQFKDGDRLTSGDLVLEIIGSVRSLLTCERVALNFLQHLSGIASMTAAYVEALGDDRIKVFDTRKTTPNLRLFEKYAVRVGGGYNHRFNLSDAIMLKDNHIAAVGSVQKAIAQARAYAPFVKMVEVEVESLAAAEEAAAAGVDIIMLDNMSLEQIEQAITLIAGRSRIECSGNIDMTTISRFRGLAIDYVSSGSLTHSAKSLDFSMKGLTYLD 289
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5HUP)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5HUP)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5HUP)

(-) Gene Ontology  (7, 7)

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5hul 5HUL IS A DELETION MUTANT
5huo 5HUO IS A DELETION MUTANT