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(-) Description

Title :  IDENTIFICATION OF LXRBETA SELECTIVE AGONISTS FOR THE TREATMENT OF ALZHEIMER'S DISEASE
 
Authors :  G. Parthasarathy, D. Klein
Date :  13 Jan 16  (Deposition) - 06 Apr 16  (Release) - 27 Apr 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.72
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Agonist, Alzheimer'S, Signaling Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  S. J. Stachel, C. Zerbinatti, M. T. Rudd, M. Cosden, S. Suon, K. K. Nanda K. Wessner, J. Dimuzio, J. Maxwell, Z. Wu, J. M. Uslaner, M. S. Michener P. Szczerba, E. Brnardic, V. Rada, Y. Kim, R. Meissner, P. Wuelfing, Y. Yuan, J. Ballard, M. Holahan, D. J. Klein, J. Lu, X. Fradera, G. Parthasarathy, V. N. Uebele, Z. Chen, Y. Li, J. Li, A. J. Cooke, D. J. Bennett, M. T. Bilodeau, J. Renger
Identification And In Vivo Evaluation Of Liver X Receptor Beta-Selective Agonists For The Potential Treatment Of Alzheimer'S Disease.
J. Med. Chem. V. 59 3489 2016
PubMed-ID: 27011007  |  Reference-DOI: 10.1021/ACS.JMEDCHEM.6B00176

(-) Compounds

Molecule 1 - OXYSTEROLS RECEPTOR LXR-ALPHA
    ChainsA, B
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    GeneNR1H3, LXRA
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymLIVER X RECEPTOR ALPHA,NUCLEAR RECEPTOR SUBFAMILY 1 GROUP H MEMBER 3
 
Molecule 2 - NUCLEAR RECEPTOR COACTIVATOR 1
    ChainsC, D
    EC Number2.3.1.48
    EngineeredYES
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymNCOA-1,CLASS E BASIC HELIX-LOOP-HELIX PROTEIN 74,BHLHE74, PROTEIN HIN-2,RIP160,RENAL CARCINOMA ANTIGEN NY-REN-52,STEROID RECEPTOR COACTIVATOR 1,SRC-1
    SyntheticYES

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

Asymmetric/Biological Unit (2, 4)
No.NameCountTypeFull Name
16682Ligand/Ion2-CHLORO-4-{1'-[(2R)-2-HYDROXY-3-METHYL-2-(TRIFLUOROMETHYL)BUTANOYL]-4,4'-BIPIPERIDIN-1-YL}-N,N-DIMETHYLBENZAMIDE
2SO42Ligand/IonSULFATE ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPHE A:93 , THR A:94 , LEU A:96 , ALA A:97 , GLU A:103 , MET A:134 , THR A:138 , ARG A:141 , PHE A:151 , LEU A:152 , LEU A:167 , PHE A:171 , HIS A:257 , GLN A:260 , LEU A:264 , LEU A:271 , TRP A:279binding site for residue 668 A 301
2AC2SOFTWAREPHE B:90 , THR B:94 , LEU B:96 , GLU B:103 , ILE B:131 , MET B:134 , THR B:138 , ARG B:141 , PHE B:151 , LEU B:152 , LEU B:167 , HIS B:257 , GLN B:260 , LEU B:264 , LEU B:271 , TRP B:279binding site for residue 668 B 301
3AC3SOFTWAREARG A:119 , HIS C:6 , GLN C:10 , HOH C:202binding site for residue SO4 C 101
4AC4SOFTWAREARG B:119 , HIS D:6 , GLN D:10 , HOH D:201binding site for residue SO4 D 101

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5HJS)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5HJS)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5HJS)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5HJS)

(-) Exons   (0, 0)

(no "Exon" information available for 5HJS)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:226
                                                                                                                                                                                                                                                                  
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhee....eeee...eeehhhhhhhh..hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5hjs A  41 QLSPEQLGMIEKLVAAQQLRVTPWPSREARQQRFAHFTELAIVSVQEIVDFAKQLPGFLQLSREDQIALLKTSAIEVMLLETSRRYNPGSESITFLKDFSYNREDFAKAGLQVEFINPIFEFSRAMNELQLNDAEFALLIAISIFSADRPNVQDQLQVERLQHTYVEALHAYVSIHHPHDRLMFPRMLMKLVSLRTLSSVHSEQVFALRLQDKKLPPLLSEIWDVH 282
                                    50       |70    ||  86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276      
                                            58|    75|                                                                                                                                                                                                        
                                             69     82                                                                                                                                                                                                        

Chain B from PDB  Type:PROTEIN  Length:226
                                                                                                                                                                                                                                                                  
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhh.ee....eeee...eeehhhhhhhh..hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5hjs B  41 QLSPEQLGMIEKLVAAQQLRVTPWPSREARQQRFAHFTELAIVSVQEIVDFAKQLPGFLQLSREDQIALLKTSAIEVMLLETSRRYNPGSESITFLKDFSYNREDFAKAGLQVEFINPIFEFSRAMNELQLNDAEFALLIAISIFSADRPNVQDQLQVERLQHTYVEALHAYVSIHHPHDRLMFPRMLMKLVSLRTLSSVHSEQVFALRLQDKKLPPLLSEIWDVH 282
                                    50       |70    ||  86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276      
                                            58|    75|                                                                                                                                                                                                        
                                             69     82                                                                                                                                                                                                        

Chain C from PDB  Type:PROTEIN  Length:15
                                               
               SCOP domains --------------- SCOP domains
               CATH domains --------------- CATH domains
               Pfam domains --------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------- SAPs(SNPs)
                    PROSITE --------------- PROSITE
                 Transcript --------------- Transcript
                 5hjs C  -3 SLTERHKILHRLLQE  11
                                     6     

Chain D from PDB  Type:PROTEIN  Length:15
                                               
               SCOP domains --------------- SCOP domains
               CATH domains --------------- CATH domains
               Pfam domains --------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------- SAPs(SNPs)
                    PROSITE --------------- PROSITE
                 Transcript --------------- Transcript
                 5hjs D  -3 SLTERHKILHRLLQE  11
                                     6     

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5HJS)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5HJS)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5HJS)

(-) Gene Ontology  (98, 110)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        NCOA1_HUMAN | Q157881fm6 1fm9 1k4w 1k74 1k7l 1kv6 1n4h 1nq7 1nrl 1p8d 1pzl 1rdt 1tfc 1u3r 1u3s 1x76 1x78 1x7b 1x7j 1xiu 1xv9 1xvp 1yy4 1yye 1zaf 2a3i 2c52 2fvj 2gtk 2hbh 2hc4 2hcd 2hfp 2npa 2nv7 2p54 2prg 3bej 3bqd 3ctb 3cwd 3dct 3dcu 3dr1 3et1 3et3 3fei 3fej 3fur 3fxv 3g8i 3g9e 3gyt 3gyu 3h0a 3hc5 3hc6 3hvl 3ipq 3ips 3ipu 3kmr 3lmp 3okh 3oki 3olf 3oll 3ols 3omk 3omm 3omo 3omp 3omq 3oof 3ook 3p88 3p89 3qt0 3rut 3ruu 3rvf 3s9s 3t03 3uu7 3uua 3uud 3v9y 3vn2 4dk7 4dk8 4dm6 4dm8 4dqm 4f9m 4fgy 4g1d 4g1y 4g1z 4g20 4g21 4g2h 4hee 4j5w 4j5x 4jyg 4jyh 4jyi 4mg5 4mg6 4mg7 4mg8 4mg9 4mga 4mgb 4mgc 4mgd 4ruj 4rup 4tuz 4tv1 4uda 4udb 4y29 5a86 5avi 5avl 5azt 5dsh 5dv3 5dv6 5dv8 5dvc 5dwl 5e7v 5ji0 5jmm 5l7e 5l7g 5l7h 5nma 5x8u 5x8w
        NR1H3_HUMAN | Q131331uhl 3ipq 3ips 3ipu 5avi 5avl

(-) Related Entries Specified in the PDB File

5hjp