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(-) Description

Title :  CRYSTAL STRUCTURE OF ARABIDOPSIS ORC1B BAH-PHD CASSETTE IN COMPLEX WITH UNMODIFIED H3 PEPTIDE
 
Authors :  S. Li, J. Du
Date :  10 Jan 16  (Deposition) - 09 Mar 16  (Release) - 16 Mar 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym./Biol. Unit :  A,P
Keywords :  Phd Finger, Bah Domain, Multivalent Readout, Transcription (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Li, Z. Yang, X. Du, R. Liu, A. W. Wilkinson, O. Gozani, S. E. Jacobsen, D. J. Patel, J. Du
Structural Basis For The Unique Multivalent Readout Of Unmodified H3 Tail By Arabidopsis Orc1B Bah-Phd Cassette
Structure V. 24 486 2016
PubMed-ID: 26876097  |  Reference-DOI: 10.1016/J.STR.2016.01.004

(-) Compounds

Molecule 1 - ORIGIN OF REPLICATION COMPLEX SUBUNIT 1B
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PGEX6P1
    Expression System Strain: BL21(DE3) RIL
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: BAH-PHD CASSETTE, UNP RESIDUES 118-349
    Gene: ORC1B, UNE13, AT4G12620, T1P17.210
    Organism Common: MOUSE-EAR CRESS
    Organism Scientific: ARABIDOPSIS THALIANA
    Organism Taxid: 3702
    Synonym: ATORC1B,ORIGIN RECOGNITION COMPLEX 1B PROTEIN,PROTEIN UNFERTILIZED EMBRYO SAC 13
 
Molecule 2 - HISTONE H3 1-15 PEPTIDE
    Chains: P
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Organism Scientific: ARABIDOPSIS THALIANA
    Organism Taxid: 3702

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AP

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric/Biological Unit (1, 2)
No.NameCountTypeFull Name
1ZN2Ligand/IonZINC ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECYS A:169 , CYS A:172 , HIS A:191 , CYS A:194binding site for residue ZN A 400
2AC2SOFTWARECYS A:183 , CYS A:186 , CYS A:209 , CYS A:212binding site for residue ZN A 401

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5HH7)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Lys A:196 -Pro A:197

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5HH7)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5HH7)

(-) Exons   (0, 0)

(no "Exon" information available for 5HH7)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:192
                                                                                                                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeee.eeee..eeee...eeee.......................eee......eee.hhh.............hhhhhhh..hhhhhhhh...eeeeeeeeeee.....eeeeeeeeehhhhh.............eeeeeeeeee...eeeeeeeehhhhhhhhh.....eee..eeee....eeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5hh7 A 128 KRVYYNKVEFDETEFEIGDDVYVKRREDEDPEIEDCQICFKSDTNIMIECDDCLGGFHLKCLKPPLKEVPEGDWICQFCEVKARTMREKLLSGDLWAARIDKLWKEVDDGVYWIRARWYMIPEETVSGRQPHNLKRELYLTNDFADIEMECILRHCSVKCPKEFSKASNDGDDVFLCEYEYDVHWRSFKRLA 344
                                   137       147       163       173       183       193       203       213 ||    242       252       262       272       282       292       302       312       322       332       342  
                                                     155|                                                  215|                                                                                                             
                                                      162                                                   235                                                                                                             


Chain P from PDB  Type:PROTEIN  Length:9
                                         
               SCOP domains --------- SCOP domains
               CATH domains --------- CATH domains
               Pfam domains --------- Pfam domains
         Sec.struct. author ......... Sec.struct. author
                 SAPs(SNPs) --------- SAPs(SNPs)
                    PROSITE --------- PROSITE
                 Transcript --------- Transcript
                 5hh7 P   1 ARTKQTARK   9
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5HH7)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5HH7)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5HH7)

(-) Gene Ontology  (17, 20)

Asymmetric/Biological Unit(hide GO term definitions)

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  5hh7
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        H32_ARATH | P59226: 4ft2 4ft4 4iur 4iut 4iuu 4iuv 5vah 5vbc

(-) Related Entries Specified in the PDB File

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