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(-) Description

Title :  CRYSTAL STRUCTURE OF A GLUTATHIONE S-TRANSFERASE PROTEIN FROM ESCHERICHIA COLI OCH 157:H7 STR. SAKAI (ECS3186, TARGET EFI-507414) WITH BOUND GLUTATHIONE
 
Authors :  D. M. Himmel, R. Toro, N. F. Al Obaidi, L. L. Morisco, S. R. Wasserman, M. J. D. Attonito, A. Scott Glenn, S. Chamala, S. Chowdhury, J. Lafleur, B. Hillerich, J. Love, R. D. Seidel, K. L. Whalen, J. A. Gerlt, S. C. Almo Function Initiative (Efi), New York Structural Genomics Rese Consortium (Nysgrc)
Date :  07 Jan 16  (Deposition) - 10 Feb 16  (Release) - 10 Feb 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.55
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Glutathione S-Transferase Family, Enzyme Function Initiative (Efi), Structural Genomics, Glutathione Ligands, New York Structural Genomics Research Consortium, Nysgrc, Oxidoreductase, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. M. Himmel, R. Toro, N. F. Al Obaidi, L. L. Morisco, S. R. Wasserman, M. Stead, J. D. Attonito, A. Scott Glenn, S. Chamala, S. Chowdhury, J. Lafleur, B. Evans, B. Hillerich, J. Love, R. D. Seidel, K. L. Whalen, J. A. Gerlt, S. C. Almo, Enzyme Function Initiative (Efi)
Crystal Structure Of A Glutathione S-Transferase Protein From Escherichia Coli Och 157:H7 Str. Sakai (Ecs3186, Targe Efi-507414) With Bound Glutathione
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - DISULFIDE-BOND OXIDOREDUCTASE YFCG
    Chains: A, B
    EC Number: 1.8.4.-, 1.11.1.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PSGC-HIS
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: YFCG, B2302, JW2299
    Organism Scientific: ESCHERICHIA COLI (STRAIN K12)
    Organism Taxid: 83333
    Other Details: SEVERAL N-TERMINAL AND CARBOXY-TERMINAL RESIDUES FOR EACH CHAIN WERE DISORDERED IN THE STRUCTURE, ACCORDING TO THE ELECTRON DENSITY.
    Strain: K12
    Synonym: GSH-DEPENDENT DISULFIDE-BOND OXIDOREDUCTASE YFCG,GST N1-1, GST-LIKE PROTEIN YFCG,ORGANIC HYDROPEROXIDASE

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

Asymmetric/Biological Unit (1, 4)
No.NameCountTypeFull Name
1GSH4Ligand/IonGLUTATHIONE

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN A:11 , GLY A:109 , PRO A:110 , GLY A:113 , TRP A:169 , GSH A:302 , HOH A:416 , HOH A:428 , HOH A:474 , HOH A:477 , HOH A:501 , ARG B:132 , HOH B:430binding site for residue GSH A 301
2AC2SOFTWARETHR A:9 , ASN A:11 , GLN A:38 , ASN A:50 , LYS A:51 , ILE A:52 , PRO A:53 , GLU A:71 , SER A:72 , GSH A:301 , HOH A:423 , HOH A:428 , HOH A:467 , HOH A:476 , HOH A:482 , HOH A:535binding site for residue GSH A 302
3AC3SOFTWAREARG A:132 , HOH A:459 , ASN B:11 , GLY B:109 , PRO B:110 , GLY B:113 , TRP B:169 , GSH B:302 , HOH B:418 , HOH B:427 , HOH B:463 , HOH B:465 , HOH B:492binding site for residue GSH B 301
4AC4SOFTWARETHR B:9 , ASN B:11 , GLN B:38 , ASN B:50 , LYS B:51 , ILE B:52 , PRO B:53 , GLU B:71 , SER B:72 , GSH B:301 , HOH B:418 , HOH B:431 , HOH B:443 , HOH B:474 , HOH B:486 , HOH B:516binding site for residue GSH B 302

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5HFK)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Ile A:52 -Pro A:53
2Ile B:52 -Pro B:53

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5HFK)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5HFK)

(-) Exons   (0, 0)

(no "Exon" information available for 5HFK)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:207
                                                                                                                                                                                                                                               
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee..hhhhhhhhhhhhhhh..eeeee.hhhhhhhhhhhhhh........eeee.........eeeehhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5hfk A   1 MIDLYFAPTPNGHKITLFLEEAGLDYRLIKVDLGKGGQFRPEFLLISPNNKIPAIVDHSPADGGEPLSLFESGAILLYLAEKTGLFLSHETRERAATLQWLFWQVGGLGPMLGQNHHFNHAAPQTIPYAIERYQVETQRLYHVLNKRLENSPWLGGENYSIADIACWPWVNAWTRQRIDLAMYPAVKNWHERIRSRPATGQALLKAQ 207
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       


Chain B from PDB  Type:PROTEIN  Length:205
                                                                                                                                                                                                                                             
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee..hhhhhhhhhhhhhhh..eeeee.hhhhhhhhhhhhhh........eeee.........eeeehhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5hfk B   1 MIDLYFAPTPNGHKITLFLEEAGLDYRLIKVDLGKGGQFRPEFLLISPNNKIPAIVDHSPADGGEPLSLFESGAILLYLAEKTGLFLSHETRERAATLQWLFWQVGGLGPMLGQNHHFNHAAPQTIPYAIERYQVETQRLYHVLNKRLENSPWLGGENYSIADIACWPWVNAWTRQRIDLAMYPAVKNWHERIRSRPATGQALLK 205
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5HFK)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5HFK)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5HFK)

(-) Gene Ontology  (9, 9)

Asymmetric/Biological Unit(hide GO term definitions)

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        YFCG_ECOLI | P77526: 3gx0

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