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(-) Description

Title :  T. CRUZI CALRETICULIN GLOBULAR DOMAIN
 
Authors :  C. P. Moreau, C. Gaboriaud
Date :  04 Jan 16  (Deposition) - 31 Aug 16  (Release) - 21 Dec 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.45
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Biol. Unit 5:  E  (1x)
Biol. Unit 6:  F  (1x)
Keywords :  Chaperone, Legume Lectin Fold, Chagas Disease (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Moreau, G. Cioci, M. Iannello, E. Laffly, A. Chouquet, A. Ferreira, N. M. Thielens, C. Gaboriaud
Structures Of Parasite Calreticulins Provide Insights Into Their Flexibility And Dual Carbohydrate/Peptide-Binding Properties.
Iucrj V. 3 408 2016
PubMed-ID: 27840680  |  Reference-DOI: 10.1107/S2052252516012847

(-) Compounds

Molecule 1 - CALRETICULIN, PUTATIVE,CALRETICULIN, PUTATIVE
    Chains: A, B, C, D, E, F
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PJEXPRESS411
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: TC00.1047053510685.10
    Organism Scientific: TRYPANOSOMA CRUZI (STRAIN CL BRENER)
    Organism Taxid: 353153

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): A     
Biological Unit 2 (1x):  B    
Biological Unit 3 (1x):   C   
Biological Unit 4 (1x):    D  
Biological Unit 5 (1x):     E 
Biological Unit 6 (1x):      F

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 9)

Asymmetric Unit (3, 9)
No.NameCountTypeFull Name
1ACY5Ligand/IonACETIC ACID
2BGC2Ligand/IonBETA-D-GLUCOSE
3CL2Ligand/IonCHLORIDE ION
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1ACY2Ligand/IonACETIC ACID
2BGC-1Ligand/IonBETA-D-GLUCOSE
3CL-1Ligand/IonCHLORIDE ION
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1ACY-1Ligand/IonACETIC ACID
2BGC1Ligand/IonBETA-D-GLUCOSE
3CL-1Ligand/IonCHLORIDE ION
Biological Unit 3 (1, 1)
No.NameCountTypeFull Name
1ACY1Ligand/IonACETIC ACID
2BGC-1Ligand/IonBETA-D-GLUCOSE
3CL-1Ligand/IonCHLORIDE ION
Biological Unit 4 (0, 0)
No.NameCountTypeFull Name
1ACY-1Ligand/IonACETIC ACID
2BGC-1Ligand/IonBETA-D-GLUCOSE
3CL-1Ligand/IonCHLORIDE ION
Biological Unit 5 (1, 2)
No.NameCountTypeFull Name
1ACY2Ligand/IonACETIC ACID
2BGC-1Ligand/IonBETA-D-GLUCOSE
3CL-1Ligand/IonCHLORIDE ION
Biological Unit 6 (1, 1)
No.NameCountTypeFull Name
1ACY-1Ligand/IonACETIC ACID
2BGC1Ligand/IonBETA-D-GLUCOSE
3CL-1Ligand/IonCHLORIDE ION

(-) Sites  (9, 9)

Asymmetric Unit (9, 9)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR A:109 , ASP A:318binding site for residue ACY A 401
2AC2SOFTWAREASP A:134binding site for residue ACY A 402
3AC3SOFTWAREARG A:141 , HIS A:143 , ILE A:144 , ILE A:145 , TRP A:155binding site for residue CL A 403
4AC4SOFTWAREPHE B:73 , TYR B:109 , LYS B:111 , GLY B:123 , ASP B:318binding site for residue BGC B 401
5AC5SOFTWARETYR C:109 , ASP C:318binding site for residue ACY C 401
6AC6SOFTWAREARG C:141 , HIS C:143 , ILE C:144 , ILE C:145 , TRP C:155binding site for residue CL C 402
7AC7SOFTWARETYR E:109 , ASP E:318binding site for residue ACY E 401
8AC8SOFTWAREASN E:296 , PRO E:297 , PHE E:299binding site for residue ACY E 402
9AC9SOFTWARETYR F:109 , LYS F:111 , GLY F:123 , MET F:130 , ASP F:318binding site for residue BGC F 401

(-) SS Bonds  (6, 6)

Asymmetric Unit
No.Residues
1A:105 -A:136
2B:105 -B:136
3C:105 -C:136
4D:105 -D:136
5E:105 -E:136
6F:105 -F:136

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5HCF)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5HCF)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5HCF)

(-) Exons   (0, 0)

(no "Exon" information available for 5HCF)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:261
                                                                                                                                                                                                                                                                                                     
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee........ee.........eeee............eeee....eeeeeeeeeeeee......eeeeeeee......eee..eeee...hhhhh.......eeeeeeee..eeeeeeeeee..eeee............eeeeeeee....eeeeee..eeeeeeehhhhh...............................eeeeeeeeee.....eeeeeeee.hhhhhhhhhhhhh..hhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5hcf A  23 TVYFHEEFKSMEHWTTSKHRDDFGKVEISAGKFYADAEKSKGLRLTEDARFYALSTAFPTPINNEKKSLVVSFSVKHEQDLKCGGGYIKLLPSMDPEKFHGETKYWLMFGPDRCGSQNRVHIILHYNGENREWSKRIRFPEDKLTHVYTLHIAADNSYEFFLDGESKAKGQLEEDWSLLLPREIVDGSGIPNPDFVEDSELHKVPEPLTHVGIDVWQVESGSIFKDIVIGDDLKEVLDLVEKTYGLKKAEADALKVMEDME 366
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       294       304       314       324       334       344    || 355       365 
                                                                                                                                                                                                                      211|                                                    349|               
                                                                                                                                                                                                                       294                                                     351               


Chain B from PDB  Type:PROTEIN  Length:263
                                                                                                                                                                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee........ee.........eeee............eeee....eeeeeeeeeeeee......eeeeeeee......eee..eeee...hhhhh.......eeeeeeee..eeeeeeeeee..eeee............eeeeeeee....eeeeee..eeeeeeehhhhh...............................eeeeeeeeee.....eeeeeeee.hhhhhhhhhhhhh..hhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5hcf B  23 TVYFHEEFKSMEHWTTSKHRDDFGKVEISAGKFYADAEKSKGLRLTEDARFYALSTAFPTPINNEKKSLVVSFSVKHEQDLKCGGGYIKLLPSMDPEKFHGETKYWLMFGPDRCGSQNRVHIILHYNGENREWSKRIRFPEDKLTHVYTLHIAADNSYEFFLDGESKAKGQLEEDWSLLLPREIVDGSGIPNPDFVEDSELHKVPEPLTHVGIDVWQVESGSIFKDIVIGDDLKEVLDLVEKTYGGLKKAEADALKVMEDMEK 367
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       294       304       314       324       334       344       354       364   
                                                                                                                                                                                                                      211|                                                                         
                                                                                                                                                                                                                       294                                                                         


Chain C from PDB  Type:PROTEIN  Length:262
                                                                                                                                                                                                                                                                                                      
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee........ee.........eeee............eeee....eeeeeeeeeeeee......eeeeeeee......eee..eeee...hhhhh.......eeeeeeee..eeeeeeeeee..eee.............eeeeeeee....eeeeee..eeeeeeehhhhh...............................eeeeeeeeee.....eeeeeeee.hhhhhhhhhhhhh..hhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5hcf C  23 TVYFHEEFKSMEHWTTSKHRDDFGKVEISAGKFYADAEKSKGLRLTEDARFYALSTAFPTPINNEKKSLVVSFSVKHEQDLKCGGGYIKLLPSMDPEKFHGETKYWLMFGPDRCGSQNRVHIILHYNGENREWSKRIRFPEDKLTHVYTLHIAADNSYEFFLDGESKAKGQLEEDWSLLLPREIVDGSGIPNPDFVEDSELHKVPEPLTHVGIDVWQVESGSIFKDIVIGDDLKEVLDLVEKTYGGLKKAEADALKVMEDME 366
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       294       304       314       324       334       344       354       364  
                                                                                                                                                                                                                      211|                                                                        
                                                                                                                                                                                                                       294                                                                        


Chain D from PDB  Type:PROTEIN  Length:264
                                                                                                                                                                                                                                                                                                        
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eee........ee.........eeee............eeee....eeeeeeeeeeeee......eeeeeeee......eee..eeee...hhhhh.......eeeeeeee..eeeeeeeeee..eeee............eeeeeeee....eeeeee..eeeeeeehhhhh...............................eeeeeeeeee.....eeeeeeee.hhhhhhhhhhhhh..hhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5hcf D  23 TVYFHEEFKSMEHWTTSKHRDDFGKVEISAGKFYADAEKSKGLRLTEDARFYALSTAFPTPINNEKKSLVVSFSVKHEQDLKCGGGYIKLLPSMDPEKFHGETKYWLMFGPDRCGSQNRVHIILHYNGENREWSKRIRFPEDKLTHVYTLHIAADNSYEFFLDGESKAKGQLEEDWSLLLPREIVDGSGIPNPDFVEDSELHKVPEPLTHVGIDVWQVESGSIFKDIVIGDDLKEVLDLVEKTYGGLKKAEADALKVMEDMEKG 368
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       294       304       314       324       334       344       354       364    
                                                                                                                                                                                                                      211|                                                                          
                                                                                                                                                                                                                       294                                                                          


Chain E from PDB  Type:PROTEIN  Length:263
                                                                                                                                                                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee........ee.........eeee............eeee....eeeeeeeeeeeee......eeeeeeee......eee..eeee...hhhhh.......eeeeeeee..eeeeeeeeee..eeee............eeeeeeee....eeeeee..eeeeeeehhhhh...............................eeeeeeeeee.....eeeeeeee.hhhhhhhhhhhhh..hhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5hcf E  23 TVYFHEEFKSMEHWTTSKHRDDFGKVEISAGKFYADAEKSKGLRLTEDARFYALSTAFPTPINNEKKSLVVSFSVKHEQDLKCGGGYIKLLPSMDPEKFHGETKYWLMFGPDRCGSQNRVHIILHYNGENREWSKRIRFPEDKLTHVYTLHIAADNSYEFFLDGESKAKGQLEEDWSLLLPREIVDGSGIPNPDFVEDSELHKVPEPLTHVGIDVWQVESGSIFKDIVIGDDLKEVLDLVEKTYGGLKKAEADALKVMEDMEK 367
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       294       304       314       324       334       344       354       364   
                                                                                                                                                                                                                      211|                                                                         
                                                                                                                                                                                                                       294                                                                         


Chain F from PDB  Type:PROTEIN  Length:262
                                                                                                                                                                                                                                                                                                      
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee........ee.........eeee............eeee....eeeeeeeeeeeee......eeeeeeee......eee..eeee...hhhhh.......eeeeeeee..eeeeeeeeee..eeee............eeeeeeee....eeeeee..eeeeeeehhhhh...............................eeeeeeeeee.....eeeeeeee.hhhhhhhhhhhhh..hhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5hcf F  23 TVYFHEEFKSMEHWTTSKHRDDFGKVEISAGKFYADAEKSKGLRLTEDARFYALSTAFPTPINNEKKSLVVSFSVKHEQDLKCGGGYIKLLPSMDPEKFHGETKYWLMFGPDRCGSQNRVHIILHYNGENREWSKRIRFPEDKLTHVYTLHIAADNSYEFFLDGESKAKGQLEEDWSLLLPREIVDGSGIPNPDFVEDSELHKVPEPLTHVGIDVWQVESGSIFKDIVIGDDLKEVLDLVEKTYGGLKKAEADALKVMEDME 366
                                    32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       294       304       314       324       334       344       354       364  
                                                                                                                                                                                                                      211|                                                                        
                                                                                                                                                                                                                       294
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5HCF)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5HCF)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5HCF)

(-) Gene Ontology  (4, 4)

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