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(-) Description

Title :  RNA PRIMER-TEMPLATE COMPLEX WITH 2-METHYLIMIDAZOLE-ACTIVATED MONOMER ANALOGUE
 
Authors :  W. Zhang, C. P. Tam, J. W. Szostak
Date :  03 Jan 16  (Deposition) - 07 Dec 16  (Release) - 18 Jan 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Rna (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  W. Zhang, C. P. Tam, J. Wang, J. W. Szostak
Unusual Base-Pairing Interactions In Monomer-Template Complexes.
Acs Cent Sci V. 2 916 2016
PubMed-ID: 28058281  |  Reference-DOI: 10.1021/ACSCENTSCI.6B00278

(-) Compounds

Molecule 1 - RNA (5'-R(*(LCC)P*(TLN)P*(LCG)P*UP*AP*CP*A)-3')
    Chains: A, B
    Engineered: YES
    Organism Scientific: SYNTHETIC CONSTRUCT
    Organism Taxid: 32630
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 8)

Asymmetric/Biological Unit (4, 8)
No.NameCountTypeFull Name
1LCC2Mod. Nucleotide[(1R,3R,4R,7S)-7-HYDROXY-3-(5-METHYLCYTOSIN-1-YL)-2,5-DIOXABICYCLO[2.2.1]HEPT-1-YL]METHYL DIHYDROGENPHOSPHATE
2LCG2Mod. Nucleotide[(1R,3R,4R,7S)-7-HYDROXY-3-(GUANIN-9-YL)-2,5-DIOXABICYCLO[2.2.1]HEPT-1-YL]METHYL DIHYDROGENPHOSPHATE
3PZG2Ligand/Ion[(2~{R},3~{S},4~{R},5~{R})-5-(2-AZANYL-6-OXIDANYLIDENE-1~{H}-PURIN-9-YL)-3,4-BIS(OXIDANYL)OXOLAN-2-YL]METHOXY-(3-METHYL-1~{H}-PYRAZOL-4-YL)PHOSPHINICACID
4TLN2Mod. Nucleotide[(1R,3R,4R,7S)-7-HYDROXY-3-(THYMIN-1-YL)-2,5-DIOXABICYCLO[2.2.1]HEPT-1-YL]METHYL DIHYDROGENPHOSPHATE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELCC A:1 , TLN A:2 , U A:4 , A A:5 , C A:6 , A A:7 , LCC B:1 , A B:7binding site for residue PZG A 101
2AC2SOFTWARELCC A:1 , TLN A:2 , C A:6 , A A:7 , LCC B:1 , TLN B:2binding site for residue PZG B 101

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5HBW)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5HBW)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5HBW)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5HBW)

(-) Exons   (0, 0)

(no "Exon" information available for 5HBW)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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Chain A from PDB  Type:RNA  Length:7
                                     
                   5hbw A 1 xxxUACA 7
                            |||    
                            |||    
                            1-LCC  
                             2-TLN 
                              3-LCG


Chain B from PDB  Type:RNA  Length:7
                                     
                   5hbw B 1 xxxUACA 7
                            |||    
                            |||    
                            1-LCC  
                             2-TLN 
                              3-LCG
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5HBW)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5HBW)

(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 5HBW)

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  5hbw
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