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(-) Description

Title :  CRYSTAL STRUCTURE OF THE ASLV FUSION PROTEIN CORE
 
Authors :  H. Aydin, J. E. Lee
Date :  28 Dec 15  (Deposition) - 06 Jan 16  (Release) - 06 Jan 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.78
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (3x)
Keywords :  Fusion, Aslv, Glycoprotein, Entry, Virus, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. Aydin, B. M. Smrke, J. E. Lee
Structural Characterization Of A Fusion Glycoprotein From A Retrovirus That Undergoes A Hybrid 2-Step Entry Mechanism.
Faseb J. V. 27 5059 2013
PubMed-ID: 24036886  |  Reference-DOI: 10.1096/FJ.13-232371

(-) Compounds

Molecule 1 - ENVELOPE GLYCOPROTEIN GP95
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: ENV
    Mutation: YES
    Organism Common: RSV-SRA
    Organism Scientific: AVIAN LEUKOSIS VIRUS RSA
    Organism Taxid: 269446
    Synonym: ENV POLYPROTEIN

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (3x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric Unit (1, 1)
No.NameCountTypeFull Name
1CL1Ligand/IonCHLORIDE ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN A:479binding site for residue CL A 601

(-) SS Bonds  (1, 1)

Asymmetric Unit
No.Residues
1A:494 -A:501

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5H9C)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) Sequences/Alignments

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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:78
                                                                                                              
               SCOP domains ------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhh..........hhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------ Transcript
                 5h9c A  -6 NLYFQGTANLTTSLLGDLLDDVTSIRHAVLQNRAAIDFLLLAHGHGCEDVAGMCSFNLSDQSESIQKKFQLMKEHVNK 526
                                  |457       467       477       487       497       507     ||518        
                                  0|                                                       513|           
                                 455                                                        515
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5H9C)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5H9C)

(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (12, 12)

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  5h9c
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  ENV_RSVSA | P03397
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  ENV_RSVSA | P03397
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ENV_RSVSA | P03397: 1xnl 4jpr

(-) Related Entries Specified in the PDB File

4jpr 4JPR CONTAINS THE SAME PROTEIN STRUCTURE