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(-) Description

Title :  CRYSTAL STRUCTURE OF THE BACILLUS SUBTILIS SMC HEAD DOMAIN COMPLEXED WITH THE COGNATE SCPA C-TERMINAL DOMAIN AND SOAKED ATP
 
Authors :  K. Kamada, T. Hirano
Date :  11 Nov 16  (Deposition) - 15 Mar 17  (Release) - 19 Apr 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.07
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  A,B,C  (1x)
Keywords :  Smc Protein, Dna Binding Protein-Cell Cycle Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Kamada, M. Su'Etsugu, H. Takada, M. Miyata, T. Hirano
Overall Shapes Of The Smc-Scpab Complex Are Determined By Balance Between Constraint And Relaxation Of Its Structural Parts
Structure V. 25 603 2017
PubMed-ID: 28286005  |  Reference-DOI: 10.1016/J.STR.2017.02.008

(-) Compounds

Molecule 1 - CHROMOSOME PARTITION PROTEIN SMC
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET-22B
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: N-TERMINAL, UNP RESIDUES 1-199
    Gene: SMC, YLQA, BSU15940
    Organism Common: BACILLUS SUBTILIS SUBSP. SUBTILIS STR. 168
    Organism Scientific: BACILLUS SUBTILIS (STRAIN 168)
    Organism Taxid: 224308
    Strain: 168
 
Molecule 2 - CHROMOSOME PARTITION PROTEIN SMC
    Chains: B
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET-22B
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: C-TERMINAL, UNP RESIDUES 1000-1186
    Gene: SMC, YLQA, BSU15940
    Mutation: YES
    Organism Common: BACILLUS SUBTILIS SUBSP. SUBTILIS STR. 168
    Organism Scientific: BACILLUS SUBTILIS (STRAIN 168)
    Organism Taxid: 224308
    Strain: 168
 
Molecule 3 - SEGREGATION AND CONDENSATION PROTEIN A
    Chains: C
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET-28M
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 176-251
    Gene: SCPA, YPUG, BSU23220
    Organism Common: BACILLUS SUBTILIS SUBSP. SUBTILIS STR. 168
    Organism Scientific: BACILLUS SUBTILIS (STRAIN 168)
    Organism Taxid: 224308
    Strain: 168

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit : ABC
Biological Unit 1 (1x): ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric Unit (1, 1)
No.NameCountTypeFull Name
1ATP1Ligand/IonADENOSINE-5'-TRIPHOSPHATE
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1ATP1Ligand/IonADENOSINE-5'-TRIPHOSPHATE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELYS A:12 , SER A:13 , GLY A:34 , GLY A:36 , LYS A:37 , SER A:38 , ASN A:39 , ARG A:57 , GLU A:62 , ASP A:63 , ILE A:65 , PHE A:66 , ALA A:67 , HOH A:1137 , HOH A:1159 , MET B:1165 , HOH B:1206binding site for residue ATP A 1001

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5H67)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5H67)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5H67)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5H67)

(-) Exons   (0, 0)

(no "Exon" information available for 5H67)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:199
                                                                                                                                                                                                                                        
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee........eeee....eeeee.....hhhhhhhhhhhhh...........hhhhhh...........eeeeeeeee...........eeeeeeeee....eeeee..eeehhhhhhhhhhhh........eeehhhhhhhhh.hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5h67 A    1 MFLKRLDVIGFKSFAERISVDFVKGVTAVVGPNGSGKSNITDAIRWVLGEQSARSLRGGKMEDIIFAGSDSRKRLNLAEVTLTLDNDDHFLPIDFHEVSVTRRVYRSGESEFLINNQPCRLKDIIDLFMDSGLGKEAFSIISQGKVEEILSSKAEDRRSIFEEAAGVLKYKTRKKKAENKLFETQDNLNRVEDILHELE  199
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190         


Chain B from PDB  Type:PROTEIN  Length:181
                                                                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeee..........eeeeee......ee.hhhhhhhhhhhhhhhhhhhhhhh...eeeee......hhhhhhhhhhhhhhhh...eeeee..hhhhhhhh.eeeeeeeee..eeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5h67 B  999 MRYKFLSEQKEDLTEAKNTLFQVIEEMDEEMTKRFNDTFVQIRSHFDQVFRSLFGGGRAELRLTDPNDLLHSGVEIIAQPPGKKLQNLNLLSGGERALTAIALLFSILKVRPVPFCVLDQVEAALDEANVFRFAQYLKKYSSDTQFIVITHRKGTMEEADVLYGVTMQESGVSKVISVKLE 1179
                                  1008      1018      1028      1038      1048      1058      1068      1078      1088      1098      1108      1118      1128      1138      1148      1158      1168      1178 


Chain C from PDB  Type:PROTEIN  Length:67
                                                                                                    
               SCOP domains ------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhh...ee.hhh....hhhhhhhhhhhhhhhhhh..eeeee......eeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------- Transcript
                5h67 C  180 PIEARMNEIVHSLKSRGTRINFMDLFPYEQKEHLVVTFLAVLELMKNQLVLIEQEHNFSDIYITGSE  246
                                   189       199       209       219       229       239
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5H67)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5H67)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5H67)

(-) Gene Ontology  (14, 18)

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  5h67
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  SCPA_BACSU | P35154
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  SMC_BACSU | P51834
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        SCPA_BACSU | P35154: 3zgx 5h66
        SMC_BACSU | P51834: 3zgx 5h66 5nmo 5nnv 5xg3

(-) Related Entries Specified in the PDB File

3w6j 3w6k 5h66 5h68 5h69