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(-)Asym./Biol. Unit
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(-) Description

Title :  THE CRYSTAL STRUCTURE OF WT PEDOBACTER HEPARINUS SMUG2
 
Authors :  W. Xie, W. Cao, P. Pang
Date :  04 Oct 16  (Deposition) - 18 Jan 17  (Release) - 22 Mar 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.25
Chains :  Asym./Biol. Unit :  A
Keywords :  Smug, Dna Damage, Glycosylase, Lyase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. Pang, Y. Yang, J. Li, Z. Wang, W. Cao, W. Xie
Smug2 Dna Glycosylase From Pedobacter Heparinus As A New Subfamily Of The Udg Superfamily
Biochem. J. V. 474 923 2017
PubMed-ID: 28049757  |  Reference-DOI: 10.1042/BCJ20160934

(-) Compounds

Molecule 1 - UNCHARACTERIZED PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Mutation: YES
    Organism Scientific: PEDOBACTER HEPARINUS DSM 2366
    Organism Taxid: 485917
    Strain: DSM 2366

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5H0K)

(-) Sites  (0, 0)

(no "Site" information available for 5H0K)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5H0K)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5H0K)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5H0K)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5H0K)

(-) Exons   (0, 0)

(no "Exon" information available for 5H0K)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:234
                                                                                                                                                                                                                                                                          
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhh...........eeehhhhhhhhhhhhhhhhhhhhh.....eeeee......hhhhhh.....hhhhhhhh...........hhhhhhhhhhhhhhhhhhhhhhheeee.....eeeee.....eee.....hhhhhhhhhhhhhhhhhhhhh..eeeeeeeee..hhhhhhhhhhhhhhh...eeeee.hhhhhhhhh..hhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5h0k A   1 MMTFADKVIQFNKDLSYTGSTLPPGIRIMNPFKEHEQTMHIVEAFYHKYYNDNQSRYLILGINPYRFGSGLTGIPFTDPKRLITECNIPYSGKLSHEPSSVFIYEMINAFGGAEAFYKQFYISSPCPLGFTSIAANGKEKNYNYYDSKALEKAVYEFIIENIRKQLTLGITTDTCFCLGTGKNEKFLMKVNAQYKFFKRIVALEHPRFIMQYKTASKQFYIDKYISAFKALNNS 234
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5H0K)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5H0K)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5H0K)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 5H0K)

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  Cis Peptide Bonds
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  5h0k
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        C6Y1J8_PEDHD | C6Y1J8: 5h0j

(-) Related Entries Specified in the PDB File

5h0j