5GWE - JenaLib

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Biological Unit 1 (Jmol Viewer)

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Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Biological Unit 4 (Jmol Viewer)

Title :   CYTOCHROME P450 CREJ

Authors :   S. Dong, X. Liu, X. Wang, Y. Feng

Date :   11 Sep 16 (Deposition) - 12 Jul 17 (Release) - 12 Jul 17 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.00

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: C  (1x)
Biol. Unit 4: D  (1x)

Keywords :   Cytochrome P450, Complex, Electron Transport (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   L. Du, S. Dong, X. Zhang, C. Jiang, J. Chen, L. Yao, X. Wang, X. Wan, X. Liu X. Wang, S. Huang, Q. Cui, Y. Feng, S. J. Liu, S. Li
Selective Oxidation Of Aliphatic C-H Bonds In Alkylphenols By A Chemomimetic Biocatalytic System
Proc. Natl. Acad. Sci. V. 114 E5129 2017 U. S. A.
PubMed-ID: 28607077 | Reference-DOI: 10.1073/PNAS.1702317114

Molecule 1 - CYTOCHROME P450
	Chains	:	A, B, C, D
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Gene	:	CGL0553
	Mutation	:	YES
	Organism Scientific	:	CORYNEBACTERIUM GLUTAMICUM (STRAIN ATCC 13032 / DSM 20300 / JCM 1318 / LMG 3730 / NCIMB 10025)
	Organism Taxid	:	196627
	Strain	:	ATCC 13032 / DSM 20300 / JCM 1318 / LMG 3730 / NCIMB 10025

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:			C
Biological Unit 4 (1x)	:				D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 15)

No.	Name	Count	Type	Full Name
1	GWM	4	Ligand/Ion	(4-METHYLPHENYL) DIHYDROGEN PHOSPHATE
2	HEM	4	Ligand/Ion	PROTOPORPHYRIN IX CONTAINING FE
3	SO4	7	Ligand/Ion	SULFATE ION

Biological Unit 1 (3, 4)

No.	Name	Count	Type	Full Name
1	GWM	1	Ligand/Ion	(4-METHYLPHENYL) DIHYDROGEN PHOSPHATE
2	HEM	1	Ligand/Ion	PROTOPORPHYRIN IX CONTAINING FE
3	SO4	2	Ligand/Ion	SULFATE ION

Biological Unit 2 (3, 4)

No.	Name	Count	Type	Full Name
1	GWM	1	Ligand/Ion	(4-METHYLPHENYL) DIHYDROGEN PHOSPHATE
2	HEM	1	Ligand/Ion	PROTOPORPHYRIN IX CONTAINING FE
3	SO4	2	Ligand/Ion	SULFATE ION

Biological Unit 3 (3, 4)

No.	Name	Count	Type	Full Name
1	GWM	1	Ligand/Ion	(4-METHYLPHENYL) DIHYDROGEN PHOSPHATE
2	HEM	1	Ligand/Ion	PROTOPORPHYRIN IX CONTAINING FE
3	SO4	2	Ligand/Ion	SULFATE ION

Biological Unit 4 (3, 3)

No.	Name	Count	Type	Full Name
1	GWM	1	Ligand/Ion	(4-METHYLPHENYL) DIHYDROGEN PHOSPHATE
2	HEM	1	Ligand/Ion	PROTOPORPHYRIN IX CONTAINING FE
3	SO4	1	Ligand/Ion	SULFATE ION

Asymmetric Unit (15, 15)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	PHE A:98 , LEU A:135 , SER A:136 , HIS A:143 , ARG A:147 , PHE A:154 , SER A:288 , ALA A:292 , GLY A:293 , THR A:296 , THR A:297 , TRP A:342 , ARG A:344 , MET A:367 , SER A:395 , PHE A:396 , PHE A:398 , HIS A:401 , CYS A:403 , GLY A:405 , ALA A:409 , GWM A:502 , HOH A:639 , HOH A:671 , HOH A:679	binding site for residue HEM A 501
02	AC2	SOFTWARE	GLN A:110 , SER A:133 , GLY A:134 , LEU A:135 , SER A:136 , ARG A:221 , SER A:288 , PHE A:291 , ALA A:292 , ILE A:339 , TRP A:342 , HEM A:501	binding site for residue GWM A 502
03	AC3	SOFTWARE	PHE A:65 , ARG A:306 , TYR A:335 , ARG A:372 , ARG A:444 , HOH A:625 , HOH A:673 , HOH A:843 , HOH A:866	binding site for residue SO4 A 503
04	AC4	SOFTWARE	ARG A:147 , GLN A:151 , HOH A:609 , HOH A:802 , HOH A:877 , HOH A:959 , HOH A:962	binding site for residue SO4 A 504
05	AC5	SOFTWARE	PHE B:98 , LEU B:135 , SER B:136 , HIS B:143 , ARG B:147 , ILE B:200 , SER B:288 , ALA B:292 , GLY B:293 , THR B:296 , THR B:297 , LEU B:300 , TRP B:342 , ARG B:344 , MET B:367 , SER B:395 , PHE B:396 , GLY B:397 , PHE B:398 , HIS B:401 , CYS B:403 , LEU B:404 , GLY B:405 , ALA B:409 , GWM B:502 , HOH B:648 , HOH B:668 , HOH B:715	binding site for residue HEM B 501
06	AC6	SOFTWARE	GLN B:110 , SER B:133 , GLY B:134 , LEU B:135 , SER B:136 , ARG B:221 , SER B:288 , PHE B:291 , ALA B:292 , ILE B:339 , TRP B:342 , HEM B:501	binding site for residue GWM B 502
07	AC7	SOFTWARE	ASN B:63 , PHE B:65 , ARG B:306 , TYR B:335 , ARG B:372 , ARG B:444 , HOH B:693 , HOH B:714	binding site for residue SO4 B 503
08	AC8	SOFTWARE	ARG B:114 , HOH B:609 , HOH B:682 , ARG D:147 , GLN D:151 , HOH D:678	binding site for residue SO4 B 504
09	AC9	SOFTWARE	PHE C:98 , LEU C:135 , SER C:136 , HIS C:143 , ARG C:147 , PHE C:154 , ILE C:200 , SER C:288 , ALA C:292 , GLY C:293 , THR C:296 , THR C:297 , LEU C:300 , TRP C:342 , ARG C:344 , MET C:367 , SER C:395 , PHE C:396 , GLY C:397 , PHE C:398 , HIS C:401 , CYS C:403 , GLY C:405 , ALA C:409 , GWM C:502 , HOH C:657 , HOH C:725 , HOH C:751	binding site for residue HEM C 501
10	AD1	SOFTWARE	GLN C:110 , SER C:133 , GLY C:134 , LEU C:135 , SER C:136 , ARG C:221 , SER C:288 , PHE C:291 , ALA C:292 , ILE C:339 , TRP C:342 , HEM C:501	binding site for residue GWM C 502
11	AD2	SOFTWARE	PHE C:65 , ARG C:306 , TYR C:335 , ARG C:372 , ARG C:444 , HOH C:619 , HOH C:764 , HOH C:766 , HOH C:769 , HOH C:786	binding site for residue SO4 C 503
12	AD3	SOFTWARE	ARG C:147 , GLN C:151 , HOH C:781 , HOH C:837 , HOH C:908 , HOH C:913	binding site for residue SO4 C 504
13	AD4	SOFTWARE	PHE D:98 , LEU D:135 , SER D:136 , HIS D:143 , ARG D:147 , PHE D:154 , ILE D:200 , SER D:288 , ALA D:292 , GLY D:293 , THR D:296 , LEU D:300 , ARG D:344 , SER D:395 , PHE D:396 , PHE D:398 , HIS D:401 , CYS D:403 , LEU D:404 , GLY D:405 , ALA D:409 , GWM D:502 , HOH D:629 , HOH D:721 , HOH D:731	binding site for residue HEM D 501
14	AD5	SOFTWARE	GLN D:110 , SER D:133 , GLY D:134 , LEU D:135 , SER D:136 , ARG D:221 , SER D:288 , PHE D:291 , ALA D:292 , ILE D:339 , TRP D:342 , HEM D:501	binding site for residue GWM D 502
15	AD6	SOFTWARE	PHE D:65 , ARG D:306 , TYR D:335 , ARG D:372 , ARG D:444 , HOH D:636 , HOH D:749 , HOH D:754	binding site for residue SO4 D 503

(no "SS Bond" information available for 5GWE)

Asymmetric Unit

No.	Residues
1	Pro A:140	-	Pro A:141
2	Pro B:140	-	Pro B:141
3	Pro C:140	-	Pro C:141
4	Pro D:140	-	Pro D:141

(no "SAP(SNP)/Variant" information available for 5GWE)

(no "PROSITE Motif" information available for 5GWE)

(no "Exon" information available for 5GWE)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:405
                                                                                                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............hhhhhhhhhhhh.eeee....eeee.hhhhhhhhhhh...ee...........hhhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eee.......hhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhh.....eeeee...eee..eee....eeeehhhhhh.................hhhhh...........hhhhhhhhhhhhhhhhhhhh...ee....................eee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5gwe A  51 TSHHGYQPFDMHNPFPAYKELRQEEPVMFDERIGYWVVTKYDDIKTTFDDWETFSSENAQAPVRKRGPQATQIMTDGGFTAYSGLSARIPPEHTRIRAIAQKAFTPRRYKALEPDIRAMVIDRVEKMLANDQHVGDMVSDLAYDIPTITILTLIGADISMVDTYKRWSDSRAAMTWGDLSDEEQIPHAHNLVEYWQECQRMVADAHAHGGDNLTADLVRAQQEGQEITDHEIASLLYSLLFAGHETTTTLISNCFRVLLDHPEQWQAILENPKLIPAAVDEVLRYSGSIVGWRRKALKDTEIGGVAIKEGDGVLLLMGSANRDEARFENGEEFDISRANAREHLSFGFGIHYCLGNMLAKLQAKICLEEVTRLVPSLHLVADKAIGFRENLSFRVPTSVPVTWNA 455
                                    60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450

Chain B from PDB  Type:PROTEIN  Length:396
                                                                                                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .............hhhhhhhhhhhh.eeee....eeee.hhhhhhhhhhh...ee...........hhhhhhhhhhh.............hhhhhhhhhhhhh...hhhhhhhhhhhhhhhh....eeehhhhh..hhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhh.....eeeee...eee..eee....eeeehhhhhh.................hhhhh...........hhhhhhhhhhhhhhhhhhhh...ee..................eee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5gwe B  51 TSHHGYQPFDMHNPFPAYKELRQEEPVMFDERIGYWVVTKYDDIKTTFDDWETFSSENAQAPVRKRGPQATQIMTDGGFTAYSGLSARIPPEHTRIRAIAQKAFTEPDIRAMVIDRVEKMLANDQHVGDMVSDLAYDIPTITILTLIGADISMVDTYKRWSDSRAAMTWGDLSDEEQIPHAHNLVEYWQECQRMVADAHAHGGDNLTADLVRAQQEGQEITDHEIASLLYSLLFAGHETTTTLISNCFRVLLDHPEQWQAILENPKLIPAAVDEVLRYSGSIVGWRRKALKDTEIGGVAIKEGDGVLLLMGSANRDEARFENGEEFDISRANAREHLSFGFGIHYCLGNMLAKLQAKICLEEVTRLVPSLHLVAAIGFRENLSFRVPTSVPVTWNA 455
                                    60        70        80        90       100       110       120       130       140       150    || 167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367       377       387       397       407       417       427   ||  439       449      
                                                                                                                                  155|                                                                                                                                                                                                                                                                         431|                     
                                                                                                                                   163                                                                                                                                                                                                                                                                          434

Chain C from PDB  Type:PROTEIN  Length:405
                                                                                                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............hhhhhhhhhhhh.eeee....eeee.hhhhhhhhhhh...ee...........hhhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh....eee.......hhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhh..hhhhhhhhhhhhhh....eeeee...eee..eee....eeeehhhhhh.................hhhhh...........hhhhhhhhhhhhhhhhhhhh...ee....................eee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5gwe C  51 TSHHGYQPFDMHNPFPAYKELRQEEPVMFDERIGYWVVTKYDDIKTTFDDWETFSSENAQAPVRKRGPQATQIMTDGGFTAYSGLSARIPPEHTRIRAIAQKAFTPRRYKALEPDIRAMVIDRVEKMLANDQHVGDMVSDLAYDIPTITILTLIGADISMVDTYKRWSDSRAAMTWGDLSDEEQIPHAHNLVEYWQECQRMVADAHAHGGDNLTADLVRAQQEGQEITDHEIASLLYSLLFAGHETTTTLISNCFRVLLDHPEQWQAILENPKLIPAAVDEVLRYSGSIVGWRRKALKDTEIGGVAIKEGDGVLLLMGSANRDEARFENGEEFDISRANAREHLSFGFGIHYCLGNMLAKLQAKICLEEVTRLVPSLHLVADKAIGFRENLSFRVPTSVPVTWNA 455
                                    60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450

Chain D from PDB  Type:PROTEIN  Length:403
                                                                                                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhhhhhhhhhh.eeee....eeee.hhhhhhhhhhh...ee...........hhhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eee.......hhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhh.....eeeee...eee..eee....eeeehhhhhh.................hhhhh...........hhhhhhhhhhhhhhhhhhhh...ee....................eee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5gwe D  53 HHGYQPFDMHNPFPAYKELRQEEPVMFDERIGYWVVTKYDDIKTTFDDWETFSSENAQAPVRKRGPQATQIMTDGGFTAYSGLSARIPPEHTRIRAIAQKAFTPRRYKALEPDIRAMVIDRVEKMLANDQHVGDMVSDLAYDIPTITILTLIGADISMVDTYKRWSDSRAAMTWGDLSDEEQIPHAHNLVEYWQECQRMVADAHAHGGDNLTADLVRAQQEGQEITDHEIASLLYSLLFAGHETTTTLISNCFRVLLDHPEQWQAILENPKLIPAAVDEVLRYSGSIVGWRRKALKDTEIGGVAIKEGDGVLLLMGSANRDEARFENGEEFDISRANAREHLSFGFGIHYCLGNMLAKLQAKICLEEVTRLVPSLHLVADKAIGFRENLSFRVPTSVPVTWNA 455
                                    62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452

Legend:		→ Mismatch	(orange background)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 5GWE)

(no "CATH Domain" information available for 5GWE)

(no "Pfam Domain" information available for 5GWE)

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(no "Gene Ontology" information available for 5GWE)

Asymmetric Unit
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	Ligands, Modified Residues, Ions
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	Cis Peptide Bonds
		Pro A:140 - Pro A:141	[ RasMol ]
		Pro B:140 - Pro B:141	[ RasMol ]
		Pro C:140 - Pro C:141	[ RasMol ]
		Pro D:140 - Pro D:141	[ RasMol ]

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(no "Related Entries Specified in the PDB File" available for 5GWE)

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 15)

Sites (15, 15)

SS Bonds (0, 0)

Cis Peptide Bonds (4, 4)

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