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(-) Description

Title :  STRUCTURE OF FABK (M276A) MUTANT FROM THERMOTOGA MARITIMA
 
Authors :  E. E. Kim, S. C. Shin, B. H. Ha, J. H. Moon
Date :  06 Sep 16  (Deposition) - 26 Apr 17  (Release) - 26 Apr 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (2x)
Biol. Unit 2:  B  (2x)
Keywords :  Fabk, Enoyl-Acp Reductase Ii, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  B. H. Ha, S. C. Shin, J. H. Moon, G. Keum, C. W. Kim, E. E. Kim
Structural And Biochemical Characterization Of Fabk From Thermotoga Maritima.
Biochem. Biophys. Res. V. 482 968 2017 Commun.
PubMed-ID: 27908729  |  Reference-DOI: 10.1016/J.BBRC.2016.11.141

(-) Compounds

Molecule 1 - ENOYL-[ACYL-CARRIER-PROTEIN] REDUCTASE [FMN]
    Chains: A, B
    EC Number: 1.3.1.9
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: TM_0800, TMARI_0801
    Mutation: YES
    Organism Scientific: THERMOTOGA MARITIMA (STRAIN ATCC 43589 / MSB8 / DSM 3109 / JCM 10099)
    Organism Taxid: 243274
    Strain: ATCC 43589 / MSB8 / DSM 3109 / JCM 10099
    Synonym: UNCHARACTERIZED PROTEIN

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (2x): A 
Biological Unit 2 (2x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric Unit (1, 2)
No.NameCountTypeFull Name
1NA2Ligand/IonSODIUM ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1NA-1Ligand/IonSODIUM ION
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1NA-1Ligand/IonSODIUM ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREILE A:212 , VAL A:213 , ALA A:215 , ALA A:281 , ILE A:284 , HOH A:523binding site for residue NA A 401
2AC2SOFTWAREILE B:212 , VAL B:213 , ALA B:215 , ALA B:281 , ILE B:284 , HOH B:560binding site for residue NA B 401

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5GVJ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5GVJ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5GVJ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5GVJ)

(-) Exons   (0, 0)

(no "Exon" information available for 5GVJ)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:294
                                                                                                                                                                                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...hhhhhhhh....ee........hhhhhhhhhhh...eeee....hhhhhhhhhhhhhhhh...eeeeee....hhhhhhhhhhhh...eeeee...hhhhhhhhhhh..eeeeee.hhhhhhhhhhh....eeee.....ee....hhhhhhhhhhhhh...eeee....hhhhhhhhhhhh..eeehhhhhhh......hhhhhhhhhhh....eeee...eeee.hhhhhhhh..hhhhhhhh...........hhhhhhh....hhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5gvj A   2 TVRTRVTDLLEIEHPILMGGMAWAGTPTLAAAVSEAGGLGIIGSGAMKPDDLRKAISELRQKTDKPFGVNIILVSPWADDLVKVCIEEKVPVVTFGAGNPTKYIRELKENGTKVIPVVASDSLARMVERAGADAVIAEGMESGGHIGEVTTFVLVNKVSRSVNIPVIAAGGIADGRGMAAAFALGAEAVQMGTRFVASVESDVHPVYKEKIVKASIRDTVVTGHPARVLRTPFARKIQLVGSLRRAVVEGDLERGSFAVGQSAGLIDEIKPVKQIIEDILKEFKETVEKLRGYI 312
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221  ||   235       258       268       278       288       298       308    
                                                                                                                                                                                                                                                        224|           243|                                                       
                                                                                                                                                                                                                                                         229            257                                                       


Chain B from PDB  Type:PROTEIN  Length:297
                                                                                                                                                                                                                                                                                                                                         
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhh....ee........hhhhhhhhhhh...eeee....hhhhhhhhhhhhhhhh...eeeeee....hhhhhhhhhhhh...eeeee...hhhhhhhhhhh..eeeeee.hhhhhhhhhhh....eeee.....ee....hhhhhhhhhhhhh...eeee....hhhhhhhhhhh...eeehhhhhhh......hhhhhhhhhhh....eeee....eeee.hhhhhhhhh....hhhhhhhh...........hhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5gvj B   3 VRTRVTDLLEIEHPILMGGMAWAGTPTLAAAVSEAGGLGIIGSGAMKPDDLRKAISELRQKTDKPFGVNIILVSPWADDLVKVCIEEKVPVVTFGAGNPTKYIRELKENGTKVIPVVASDSLARMVERAGADAVIAEGMESGGHIGEVTTFVLVNKVSRSVNIPVIAAGGIADGRGMAAAFALGAEAVQMGTRFVASVESDVHPVYKEKIVKASIRDTVVTGAHPARVLRTPFARKIQEEMLVGSLRRAVVEGDLERGSFAVGQSAGLIDEIKPVKQIIEDILKEFKETVEKLRGYI 312
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222  ||   235       255       265       275       285       295       305       
                                                                                                                                                                                                                                                        225|            244|                                                         
                                                                                                                                                                                                                                                         229             255
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5GVJ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5GVJ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5GVJ)

(-) Gene Ontology  (5, 5)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        Q9WZQ7_THEMA | Q9WZQ7: 5gvh
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        Q9WZQ7_THEMA | Q9WZQ7: 3bo9

(-) Related Entries Specified in the PDB File

5gvh