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(-) Description

Title :  THE CRYSTAL STRUCTURE OF THE CPS-6 H148A/F122A
 
Authors :  J. L. Lin, H. S. Yuan
Date :  04 Jul 16  (Deposition) - 23 Nov 16  (Release) - 23 Nov 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.89
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Mitochondria, H148A, F122A Mutation, Dna/Rna Binding, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. L. Lin, C. C. Wu, W. Z. Yang, H. S. Yuan
Crystal Structure Of Endonuclease G In Complex With Dna Reveals How It Nonspecifically Degrades Dna As A Homodimer.
Nucleic Acids Res. 2016
PubMed-ID: 27738134  |  Reference-DOI: 10.1093/NAR/GKW931

(-) Compounds

Molecule 1 - ENDONUCLEASE G, MITOCHONDRIAL
    Chains: A, B
    EC Number: 3.1.30.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: M15
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 63-305
    Gene: CPS-6, C41D11.8
    Mutation: YES
    Organism Scientific: CAENORHABDITIS ELEGANS
    Organism Taxid: 6239
    Synonym: ENDO G,CED-3 PROTEASE SUPPRESSOR 6

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5GKC)

(-) Sites  (0, 0)

(no "Site" information available for 5GKC)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5GKC)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5GKC)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5GKC)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5GKC)

(-) Exons   (0, 0)

(no "Exon" information available for 5GKC)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:238
                                                                                                                                                                                                                                                                              
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhhh.........eee....eeeee....eeeeeeeeehhhhhh..............hhhhh.hhhhhh....eeee..hhhhh..hhhhhhhhhhhh.eeee.......hhhhhhhhhhhhhhhh..eeeeeeeee...ee.....eeeeeeee....ee...eeeeeeeeeee..eeeeeeeeee........hhhhhh.hhhhhhhhhh.......hhh.eeee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5gkc A  61 GSPSRSAEIMKHGYPGFTNVRTYEDFVLSYDYKTRTAHWVCEHLTPERLKVDRKLCEAKPDITFPQKFLSQNTDYKCSGFDRGALAAAGNHRKSQLAVDQTFYLSNMSPQVGRGFNRDKWNDLEMHCRRVAKKMINSYIITGPLYLPKLEGDGKKYIKYQVIGDNNVAVPTHFFKVALFEVTPGKFELESYILPNAVIEDTVEISKFHVPLDAVERSAGLEIFARLDPKSIVKENGAK 302
                                    70        80        90       100       110|      124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294        
                                                                           110|                                                                                                                                                                                           
                                                                            115                                                                                                                                                                                           


Chain B from PDB  Type:PROTEIN  Length:243
                                                                                                                                                                                                                                                                                   
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhh.........eee....eeeee....eeeeeeeee.hhhhh..................hhhhh.hhhhhh....eeee..hhhhh..hhhhhhhhhhhh.eeee.......hhhhhhhhhhhhhhh...eeeeeeeee...ee.....eeeeeeee....ee...eeeeeeeeeee..eeeeeeeeee........hhhhhh.hhhhhhhhhh.......hhh.eeee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5gkc B  60 HGSPSRSAEIMKHGYPGFTNVRTYEDFVLSYDYKTRTAHWVCEHLTPERLKHAEGVDRKLCEAKPDITFPQKFLSQNTDYKCSGFDRGALAAAGNHRKSQLAVDQTFYLSNMSPQVGRGFNRDKWNDLEMHCRRVAKKMINSYIITGPLYLPKLEGDGKKYIKYQVIGDNNVAVPTHFFKVALFEVTPGKFELESYILPNAVIEDTVEISKFHVPLDAVERSAGLEIFARLDPKSIVKENGAK 302
                                    69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299
   Legend:   → Mismatch (orange background)
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    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5GKC)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5GKC)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5GKC)

(-) Gene Ontology  (15, 15)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        NUCG_CAEEL | Q95NM6: 3s5b 4qn0 5gkp

(-) Related Entries Specified in the PDB File

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