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(-) Description

Title :  STRUCTURAL AND BIOCHEMICAL INSIGHTS INTO 7BETA-HYDROXYSTEROID DEHYDROGENASE STEREOSELECTIVITY
 
Authors :  S. Savino, E. Ferrandi, F. Forneris, S. Rovida, S. Riva, D. Monti, A. Ma
Date :  07 Mar 16  (Deposition) - 06 Apr 16  (Release) - 01 Jun 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.60
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Oxidoreductase, Short-Chain Dehydrogenase, Steroid, Stereoselectivity, Dehydrogenase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Savino, E. E. Ferrandi, F. Forneris, S. Rovida, S. Riva, D. Monti, A. Mattevi
Structural And Biochemical Insights Into 7Beta- Hydroxysteroid Dehydrogenase Stereoselectivity.
Proteins V. 84 859 2016
PubMed-ID: 27006087  |  Reference-DOI: 10.1002/PROT.25036

(-) Compounds

Molecule 1 - OXIDOREDUCTASE, SHORT CHAIN DEHYDROGENASE/REDUCTASE FAMILY PROTEIN
    Chains: A, B
    EC Number: 1.1.1.201
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector: PET24B
    Expression System Vector Type: PLASMID
    Organism Scientific: COLLINSELLA AEROFACIENS
    Organism Taxid: 74426
    Synonym: 7BETA-HYDROXYSTEROID DEHYDROGENASE

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:74 , TRP A:105 , HOH A:2062 , HOH A:2063 , GLU B:74 , PHE B:77 , LYS B:121 , HIS B:124 , HIS B:125 , HOH B:2078BINDING SITE FOR RESIDUE GOL A1260

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5FYD)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Gly B:201 -Pro B:202

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5FYD)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5FYD)

(-) Exons   (0, 0)

(no "Exon" information available for 5FYD)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:259
                                                                                                                                                                                                                                                                                                   
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhh.eeeee...hhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhhhhhhh..eeeee......hhhhhhhhhhh...eeeeee........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeeeeehhhhhh...hhhhhhhhhhhhhhhhhhhhhh....eeeeeeee....hhhhhh....hhhhhhhhh...hhhhhhhhhhhhh....eee.hhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5fyd A   1 MNLREKYGEWGLILGATEGVGKAFCEKIAAGGMNVVMVGRREEKLNVLAGEIRETYGVETKVVRADFSQPGAAETVFAATEGLDMGFMSYVACLHSFGKIQDTPWEKHEAMINVNVVTFLKCFHHYMRIFAAQDRGAVINVSSMTGISSSPWNGQYGAGKAFILKMTEAVACECEGTGVDVEVITLGTTLTPSLLSNLPGGPQGEAVMKIALTPEECVDEAFEKLGKELSVIAGQRNKDSVHDWKANHTEDEYIRYMGS 259
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250         


Chain B from PDB  Type:PROTEIN  Length:252
                                                                                                                                                                                                                                                                                            
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhh..eeeee...hhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhhhhhhh..eeeee......hhhhhhhhhhh...eeeeee........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeeeehhhhhh...hhhhhhhhhhhhhhhhhhhhhhh...eeeeeeee....hhhhhhh........hhhhhhhhhhhhh....eee.hhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5fyd B   1 MNLREKYGEWGLILGATEGVGKAFCEKIAAGGMNVVMVGRREEKLNVLAGEIRETYGVETKVVRADFSQPGAAETVFAATEGLDMGFMSYVACLHSFGKIQDTPWEKHEAMINVNVVTFLKCFHHYMRIFAAQDRGAVINVSSMTGISSSPWNGQYGAGKAFILKMTEAVACECEGTGVDVEVITLGTTLTPSLLSNLPGGPQALTPEECVDEAFEKLGKELSVIAGQRNKDSVHDWKANHTEDEYIRYMGS 259
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200  ||   217       227       237       247       257  
                                                                                                                                                                                                                                    203|                                                
                                                                                                                                                                                                                                     211
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5FYD)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5FYD)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5FYD)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 5FYD)

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 Related Entries

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UniProtKB/Swiss-Prot
        A4ECA9_9ACTN | A4ECA9: 5gt9

(-) Related Entries Specified in the PDB File

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