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(-) Description

Title :  CRYSTAL STRUCTURE OF M. MUSCULUS PROTEIN ARGININE METHYLTRANSFERASE PRMT6 WITH SAH AND MAGNESIUM
 
Authors :  L. Bonnefond, J. Cavarelli
Date :  14 Dec 15  (Deposition) - 18 Jan 17  (Release) - 18 Jan 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Transferase, S-Adenosyl-L-Methionine (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. Bonnefond, V. Cura, N. Troffer-Charlier, J. Cavarelli
Crystal Strcutures Of Prmt6 In Complex With Sah In Alternative Conformations
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PROTEIN ARGININE N-METHYLTRANSFERASE 6
    Chains: A
    EC Number: 2.1.1.-, 2.1.1.125
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PNEA-VH
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector: PET15 DERIVATIVE
    Expression System Vector Type: PLASMID
    Organism Common: HOUSE MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
    Synonym: HISTONE-ARGININE N-METHYLTRANSFERASE PRMT6

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric Unit (2, 2)
No.NameCountTypeFull Name
1MG1Ligand/IonMAGNESIUM ION
2SAH1Ligand/IonS-ADENOSYL-L-HOMOCYSTEINE
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1MG-1Ligand/IonMAGNESIUM ION
2SAH2Ligand/IonS-ADENOSYL-L-HOMOCYSTEINE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:60 , MET A:63 , ARG A:69 , GLY A:93 , ALA A:94 , LEU A:99 , GLU A:115 , ALA A:116 , SER A:117 , GLY A:141 , PRO A:142 , VAL A:143 , GLU A:144 , GLU A:158 , MET A:169 , SER A:172 , HOH A:2008 , HOH A:2036 , HOH A:2037 , HOH A:2109 , HOH A:2247BINDING SITE FOR RESIDUE SAH A1378
2AC2SOFTWAREGLU A:158 , MET A:160 , HOH A:2014 , HOH A:2015 , HOH A:2092 , HOH A:2096 , HOH A:2097BINDING SITE FOR RESIDUE MG A1379

(-) SS Bonds  (1, 1)

Asymmetric Unit
No.Residues
1A:53 -A:232

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Leu A:188 -Pro A:189

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5FQO)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5FQO)

(-) Exons   (0, 0)

(no "Exon" information available for 5FQO)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:324
                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeee....hhhhhhhhhh...eeeeee...hhhhhhhhhhhh.....eeeee...........eeeee............hhhhhhhhhhhheeeeeeee..eeeeeeeee.hhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhh..eeeee..hhhh.....eeeeeee....hhhhhhhhheeeeeeee....eeeeeeeeeeeeee...eeee...........eeeeeeeeeeee....eeeeeeeeee.......eeeeeeeee.....eeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5fqo A  49 LYYECYSDVSVHEEMIADQVRTEAYRLGILKNWAALRGKTVLDVGAGTGILSIFCAQAGARRVYAVEASAIWQQAREVVRLNGLEDRVHVLPGPVETVELPERVDAIVSEWMGYGLLHESMLSSVLHARTKWLKEGGLLLPASAELFVAPISDQMLEWRLGFWSQVKQHYGVDMSCMESFATRCLMGHSEIVVQDLSGEDVLARPQRFAQLELARAGLEQELEAGVGGRFRCSCYGSAPLHGFAVWFQVTFPGPLVLSTSPLHPATHWKQALLYLNEPVPVEQDTDISGEITLLPSPDNPRRLRILLRYKVGDHEEKTKDFAME 377
                                    58        68        78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       268       278       288       298  ||   313       323       333       343       353       363       373    
                                                                                                                                                                                                                                                                                      301|                                                                      
                                                                                                                                                                                                                                                                                       307
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5FQO)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5FQO)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5FQO)

(-) Gene Ontology  (28, 28)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

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        ANM6_MOUSE | Q6NZB1: 4c03 4c04 4c05 4c06 4c07 4c08 5fqn

(-) Related Entries Specified in the PDB File

5fqn CRYSTAL STRUCTURE OF M. MUSCULUS PROTEIN ARGININE METHYLTRANSFERASE PRMT6 WITH SAH AT 1.65 ANGSTROMS