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(-) Description

Title :  CRYSTAL STRUCTURE OF THE OXA10 WITH 1C
 
Authors :  J. Brem, M. A. Mcdonough, R. Cain, I. Clifton, C. W. G. Fishwick, C. J. Sch
Date :  08 Dec 15  (Deposition) - 17 Aug 16  (Release) - 17 Aug 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.50
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Hydrolase, Antibiotic Resistance (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Brem, R. Cain, S. Cahill, M. A. Mcdonough, I. J. Clifton, J. -C. Jimenez-Castellanos, M. B. Avison, J. Spencer, C. W. G. Fishwick, C. J. Schofield
Structural Basis Of Metallo-Beta-Lactamase, Serine-Beta-Lactamase, And Penicillin Binding Protein Inhibition By Cyclic Boronates
Nat. Commun. V. 7 12406 2016
PubMed-ID: 27499424  |  Reference-DOI: 10.1038/NCOMMS12406

(-) Compounds

Molecule 1 - BETA-LACTAMASE OXA-10
    Chains: A, B
    EC Number: 3.5.2.6
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector: PET22B
    Expression System Vector Type: PLASMID
    Organism Scientific: PSEUDOMONAS AERUGINOSA
    Organism Taxid: 287
    Other Details: 1C BOUND TO THE ACTIVE SITE

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (6, 11)

Asymmetric/Biological Unit (6, 11)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2C6S2Ligand/Ion(3R)-3-(CYCLOHEXYLCARBONYLAMINO)-2-OXIDANYL-3,4-DIHYDRO-1,2-BENZOXABORININE-8-CARBOXYLICACID
3CL1Ligand/IonCHLORIDE ION
4GOL4Ligand/IonGLYCEROL
5KCX2Mod. Amino AcidLYSINE NZ-CARBOXYLIC ACID
6NA1Ligand/IonSODIUM ION

(-) Sites  (9, 9)

Asymmetric Unit (9, 9)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETHR A:107 , ARG A:109 , HOH A:2170 , HOH A:2332 , ALA B:197 , PRO B:198 , GLU B:199 , TYR B:200 , GLU B:229BINDING SITE FOR RESIDUE GOL A 400
2AC2SOFTWAREALA A:98 , MET A:99 , GLU A:129 , ILE A:146 , GLY A:148 , GLY A:149 , ILE A:150 , HOH A:2147 , HOH A:2148 , HOH A:2333BINDING SITE FOR RESIDUE GOL A 401
3AC3SOFTWARELYS A:138 , PHE A:139 , SER A:140 , GLU A:168 , SER A:172 , LEU A:178 , HOH A:2210 , HOH A:2334BINDING SITE FOR RESIDUE GOL A 402
4AC4SOFTWAREGLU A:199 , GLU A:227 , GLU A:229 , HOH A:2274 , HOH A:2292 , HOH A:2335 , THR B:107BINDING SITE FOR RESIDUE ACT A 500
5AC5SOFTWAREALA A:98 , HOH A:2056BINDING SITE FOR RESIDUE CL A 600
6AC6SOFTWARELEU B:43 , LYS B:45 , SER B:50 , HOH B:2154 , HOH B:2156BINDING SITE FOR RESIDUE GOL B 400
7AC7SOFTWAREGLY B:20 , GLU B:171BINDING SITE FOR RESIDUE NA B 500
8AC8SOFTWAREALA A:66 , SER A:67 , SER A:115 , VAL A:117 , GLU A:129 , VAL A:130 , THR A:206 , GLY A:207 , PHE A:208 , SER A:209 , ARG A:250 , HOH A:2331BINDING SITE FOR LIGAND C6S A 300 BOUND TO SER A 67
9AC9SOFTWAREALA B:66 , SER B:67 , KCX B:70 , SER B:115 , VAL B:117 , THR B:206 , GLY B:207 , PHE B:208 , SER B:209 , ARG B:250BINDING SITE FOR LIGAND C6S B 300 BOUND TO SER B 67

(-) SS Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1A:44 -A:51
2B:44 -B:51

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5FQ9)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5FQ9)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5FQ9)

(-) Exons   (0, 0)

(no "Exon" information available for 5FQ9)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:246
                                                                                                                                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeee...hhhhhhh....eeeeeee....eeee.hhhhhh.ee.hhhhhhhhhhhhhhhh........ee........hhhhh..eehhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh.....................eehhhhhhhhhhhhh.....hhhhhhhhhhhheeeee..eeeeeeeee.........eeeeeeeeeee..eeeeeeeeeee.hhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5fq9 A  19 MGSITENTSWNKEFSAEAVNGVFVLCKSSSKSCATNDLARASKEYLPASTFkIPNAIIGLETGVIKNEHQVFKWDGKPRAMKQWERDLTLRGAIQVSAVPVFQQIAREVGEVRMQKYLKKFSYGNQNISGGIDKFWLEGQLRISAVNQVEFLESLYLNKLSASKENQLIVKEALVTEAAPEYLVHSKTGFSGVGTESNPGVAWWVGWVEKETEVYFFAFNMDIDNESKLPLRKSIPTKIMESEGII 264
                                    28        38        48        58        68 |      78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258      
                                                                              70-KCX                                                                                                                                                                                              


Chain B from PDB  Type:PROTEIN  Length:247
                                                                                                                                                                                                                                                                                       
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee...hhhhhhh....eeeeeee....eeee.hhhhhh.ee.hhhhhhhhhhhhhhhh........ee........hhhhh..eehhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh.....................eehhhhhhhhhhhhh.....hhhhhhhhhhhheeeee..eeeeeeeee.........eeeeeeeeeee..eeeeeeeeeee.hhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5fq9 B  19 MGSITENTSWNKEFSAEAVNGVFVLCKSSSKSCATNDLARASKEYLPASTFkIPNAIIGLETGVIKNEHQVFKWDGKPRAMKQWERDLTLRGAIQVSAVPVFQQIAREVGEVRMQKYLKKFSYGNQNISGGIDKFWLEGQLRISAVNQVEFLESLYLNKLSASKENQLIVKEALVTEAAPEYLVHSKTGFSGVGTESNPGVAWWVGWVEKETEVYFFAFNMDIDNESKLPLRKSIPTKIMESEGIIG 265
                                    28        38        48        58        68 |      78        88        98       108       118       128       138       148       158       168       178       188       198       208       218       228       238       248       258       
                                                                              70-KCX
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5FQ9)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5FQ9)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5FQ9)

(-) Gene Ontology  (5, 5)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        BLO10_PSEAI | P14489: 1e3u 1e4d 1ewz 1fof 1k4e 1k4f 1k54 1k55 1k56 1k57 1k6r 1k6s 2hp5 2hp6 2hp9 2hpb 2rl3 2wgi 2wgv 2wgw 2wkh 2wki 2x01 2x02 3lce 4s2o 4wz5 5mmy 5mnu 5mox 5moz

(-) Related Entries Specified in the PDB File

5fqc CRYSTAL STRUCTURE OF THE METALLO-BETA-LACTAMASE VIM-2 WITH 2C