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(-) Description

Title :  CRIFT52 N-TERMINAL DOMAIN
 
Authors :  A. Mourao, M. Vetter, E. Lorentzen
Date :  09 Nov 15  (Deposition) - 09 Mar 16  (Release) - 13 Apr 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Keywords :  Transport Protein, Intraflagellar Transport , Iftb, Ift52, Chlamydomonas, Protein-Protein Interaction (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. Taschner, K. Weber, A. Mourao, M. Vetter, M. Awasthi, M. Stiegler, S. Bhogaraju, E. Lorentzen
Intraflagellar Transport Proteins 172, 80, 57, 54, 38, And 20 Form A Stable Tubulin-Binding Ift-B2 Complex.
Embo J. V. 35 773 2016
PubMed-ID: 26912722  |  Reference-DOI: 10.15252/EMBJ.201593164

(-) Compounds

Molecule 1 - INTRAFLAGELLAR TRANSPORT PROTEIN COMPONENT IFT52
    Chains: A, B, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PEC-A-HT-HIS
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: GIFT, RESIDUES 1-272
    Organism Scientific: CHLAMYDOMONAS REINHARDTII
    Organism Taxid: 3055

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit : ABC
Biological Unit 1 (1x): A  
Biological Unit 2 (1x):  B 
Biological Unit 3 (1x):   C

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

Asymmetric Unit (1, 4)
No.NameCountTypeFull Name
1SO44Ligand/IonSULFATE ION
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1SO41Ligand/IonSULFATE ION
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1SO41Ligand/IonSULFATE ION
Biological Unit 3 (1, 2)
No.NameCountTypeFull Name
1SO42Ligand/IonSULFATE ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:124 , HIS A:127 , ARG A:164 , HOH A:2111 , HOH A:2118 , HOH A:2119 , HOH A:2195 , LYS B:81BINDING SITE FOR RESIDUE SO4 A 903
2AC2SOFTWAREARG B:43 , ARG B:124 , HIS B:127 , ARG B:164 , HOH B:2124 , HOH B:2127 , LYS C:81BINDING SITE FOR RESIDUE SO4 B 903
3AC3SOFTWARELYS A:81 , ARG C:124 , HIS C:127 , TYR C:128 , ARG C:164 , SO4 C:904 , HOH C:2077 , HOH C:2080BINDING SITE FOR RESIDUE SO4 C 903
4AC4SOFTWAREHIS C:127 , LYS C:129 , SO4 C:903 , HOH C:2080BINDING SITE FOR RESIDUE SO4 C 904

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5FMR)

(-) Cis Peptide Bonds  (6, 6)

Asymmetric Unit
No.Residues
1Lys A:191 -Pro A:192
2Tyr A:204 -Pro A:205
3Lys B:191 -Pro B:192
4Tyr B:204 -Pro B:205
5Lys C:191 -Pro C:192
6Tyr C:204 -Pro C:205

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5FMR)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5FMR)

(-) Exons   (0, 0)

(no "Exon" information available for 5FMR)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:242
                                                                                                                                                                                                                                                                                  
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee............hhhhhhhhh...eeeeehhhhhhhhhhhh..eeeee......hhhhhhhhhhhhhh..eeeee...hhhhhhh..hhhhhh...eee.....ee..........eeee.....hhhhh.............eeee....eee....eeeee....ee....eeeeeee.....eeeee..hhhhh.......hhhhhhhhhhhhhh.......hhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5fmr A  12 EVRILFSTAKGESHTHKAGFKQLFRRLRSTYRPDKVDKDDFTLDTLRSAHILVLGGPKEKFTAPEVDMLKKFVKNGGSILILMSEGGEEKAGTNINYFLEQFGMSVNNDAVVRTTHYKYLHPKEVLISDGILNRAVITDEFRVFDGTGLEYVFPFGATLSVQKPAVPVLSSGKIAYPMNRPVGAVWAQPGYGRIAVLGSCAMFDDKWLDKEENSKIMDFFFKFLEPHSKIQLNDIDAEEPDV 270
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       162  ||   178       188       198       208       218       228       238       248       258       268  
                                                                                                                                                                   149| 165|                                                                                                  
                                                                                                                                                                    161  172                                                                                                  


Chain B from PDB  Type:PROTEIN  Length:242
                                                                                                                                                                                                                                                                                  
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee............hhhhhhhhhh..eeeee.....hhhhhhh..eeeee......hhhhhhhhhhhhhh..eeeee...hhhhhhh..hhhhhh...eee.....ee..........eeee.....hhhhh.............eeee....eee....eeeee....ee....eeeeeee.....eeeee..hhhhh.......hhhhhhhhhhhhhh.......hhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5fmr B  12 EVRILFSTAKGESHTHKAGFKQLFRRLRSTYRPDKVDKDDFTLDTLRSAHILVLGGPKEKFTAPEVDMLKKFVKNGGSILILMSEGGEEKAGTNINYFLEQFGMSVNNDAVVRTTHYKYLHPKEVLISDGILNRAVITDEFRVFDGTGLEYVFPFGATLSVQKPAVPVLSSGKIAYPMNRPVGAVWAQPGYGRIAVLGSCAMFDDKWLDKEENSKIMDFFFKFLEPHSKIQLNDIDAEEPDV 270
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       162  ||   178       188       198       208       218       228       238       248       258       268  
                                                                                                                                                                   149| 165|                                                                                                  
                                                                                                                                                                    161  172                                                                                                  


Chain C from PDB  Type:PROTEIN  Length:244
                                                                                                                                                                                                                                                                                    
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee............hhhhhhhhhh..eeeeehhhhhhhhhhhh..eeeee......hhhhhhhhhhhhhh..eeeee...hhhhhhh..hhhhhhh..eee.....ee..........eeee.....hhhhh.............eeee....eee....eeeee....ee....eeeeeee.....eeeee..hhhhh.......hhhhhhhhhhhhhh.......hhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5fmr C  12 EVRILFSTAKGESHTHKAGFKQLFRRLRSTYRPDKVDKDDFTLDTLRSAHILVLGGPKEKFTAPEVDMLKKFVKNGGSILILMSEGGEEKAGTNINYFLEQFGMSVNNDAVVRTTHYKYLHPKEVLISDGILNRAVITDEFRVFDGTGLEYVFPFGATLSVQKPAVPVLSSGKIAYPMNRPVGAVWAQPGYGRIAVLGSCAMFDDKWLDKEENSKIMDFFFKFLEPHSKIQLNDIDAEEPDVSD 272
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       162  ||   178       188       198       208       218       228       238       248       258       268    
                                                                                                                                                                   149| 165|                                                                                                    
                                                                                                                                                                    161  172
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5FMR)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5FMR)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5FMR)

(-) Gene Ontology  (1, 1)

Asymmetric Unit(hide GO term definitions)

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5fms MMIFT52 N-TERMINAL DOMAIN