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(-) Description

Title :  STRUCTURE OF UNLIGANDED PIF1 FROM BACTEROIDES SP
 
Authors :  X. Zhou, W. Ren, S. R. Bharath, H. Song
Date :  22 Dec 15  (Deposition) - 30 Mar 16  (Release) - 30 Mar 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Pif1 Helicase, Dna Helicase, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  X. Zhou, W. Ren, S. R. Bharath, X. Tang, Y. He, C. Chen, Z. Liu, D. Li, H. Song
Structural And Functional Insights Into The Unwinding Mechanism Of Bacteroides Sp Pif1
Cell Rep V. 14 2030 2016
PubMed-ID: 26904952  |  Reference-DOI: 10.1016/J.CELREP.2016.02.008

(-) Compounds

Molecule 1 - UNCHARACTERIZED PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: HMPREF0101_01022
    Organism Scientific: BACTEROIDES SP. 2_1_16
    Organism Taxid: 469587
    Synonym: PIF1

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5FHG)

(-) Sites  (0, 0)

(no "Site" information available for 5FHG)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5FHG)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Lys A:335 -Asp A:336

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5FHG)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5FHG)

(-) Exons   (0, 0)

(no "Exon" information available for 5FHG)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:426
                                                                                                                                                                                                                                                                                                                                                                                                                                                                          
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhh....eeee.....hhhhhhhhhhhh..eeeee.hhhhhhhhh.eehhhhhh..............hhhhhhhhhhh.eeee.hhhhhhhhhhhhhhhhhhhhhh..hhhhhheeeeee.........hhhhhhhhhh.....hhhhhhhhhh.eeeeee........hhhhhhhhhhhhh...hhhhhhhhh...hhhhhh......eeee.hhhhhhhhhhhhhh....eeee.eeee..hhhhh....eeee....eeee.............eeeeeee....eeeee....eeee..eeeeeeeeee....eeeeeeeeeee..eee..eee...........eee........hhhhhhhhh..hhh.eee....hhhhhh.hhhhhhhhhhhhhh..eee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5fhg A   3 DMILTEEMQKIMNLIQDDENNVFVTGKAGSGKTTFLKYLIEKKNCIVAAPTGIAAINAGGVTLHSLFGIPFGPITPYDRLEFSEYKVELLLKMELLIIDEISMVRPDILDTIDRKLRWVYESDEPFGGVQVVMFGDLFQLPPVTKKQEREILSDFYDGFFFFNALVFKRTGFHIVELTKIFRQTEPEFINVLNNIRNYQVTSDELDLLSELKDRKISSSYDNEYIHICTHKADVEKINADKLGEQEIRNYDIVIKDKFPESSIPCDLHLKLRVGARVMSLVNDSLKGYYNGMLGIVTALEDNVITVRMDNGRTIKFERYTWSNTQYTLKDNEIVKEEIGSCTQFPLTLAWAITIHKSQGLTFDKIIIHVSHTFCPGQLYVALSRCRTLEGIVSDAFITKQMIIPEYALIDFERAYKSEGNYYGKRL 432
                                    12        22        32        42 ||     54        64        74        84||      96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426      
                                                                    44|                                    85|                                                                                                                                                                                                                                                                                                                                                        
                                                                     47                                     88                                                                                                                                                                                                                                                                                                                                                        


Chain B from PDB  Type:PROTEIN  Length:308
                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eee..eeeee.hhhhhhhhh.eehhhhh.................hhhhhhhhhhh.eeee.hhhhhhhhhhhhhhhhhhhhhh..hhhhhheeeee..........hhhhhhhhhh.eeeee.........eeee.hhhhhhhhhhhhhh....eeee.eeee..hhhhh....eeee....eeee.............eeeeeee....eeeee....eeee..eeeeeeeee..eeeeeeeeee..eee..eee...........eee..hhhhh......eee..hhhhhhh..eee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5fhg B  20 DENNVFVTNCIVAAPTGIAAINAGGVTLHSLFGIPFGPITPYDRLENKFSEYKVELLLKMELLIIDEISMVRPDILDTIDRKLRWVYESDEPFGGVQVVMFGILSDFYDGFFFFNALVFKRTGFHIVISSSYDNEYIHICTHKADVEKINADKLGEQEIRNYDIVIKDKFPESSIPCDLHLKLRVGARVMSLVNDSLKGYYNGMLGIVTALEDNVITVRMDNGRTIKFERYTWSNTQYTLIVKEEIGSCTQFPLTLAWAITIHKSQGLTFDKIIIHYVALSRCRTLEGIVSDFERAYKSEGNYYGKRL 432
                                   |49        59        69        79        89        99       109       119       129       139 ||    164       174      |224       234       244       254       264       274       284       294       304       314       324       334|      348       358       368     ||388       398 ||    424        
                                  27|                                                                                          141|                     181|                                                                                                             334|                                374|            400|               
                                   48                                                                                           157                      222                                                                                                              339                                 385             417
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5FHG)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5FHG)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5FHG)

(-) Gene Ontology  (6, 6)

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  Cis Peptide Bonds
    Lys A:335 - Asp A:336   [ RasMol ]  
 
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 Related Entries

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UniProtKB/TrEMBL
        D1JM21_9BACE | D1JM21: 5fhd 5fhe 5fhf

(-) Related Entries Specified in the PDB File

5fhd 5fhe 5fhf 5fhh