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(-) Description

Title :  S. AUREUS MEPR F27L MUTANT BOUND TO OLIGODEOXYRIBONUCLEOTIDE
 
Authors :  I. Birukou, C. E. Newman, R. G. Brennan
Date :  13 Dec 15  (Deposition) - 14 Dec 16  (Release) - 14 Dec 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (2x)
Keywords :  Winged Helix-Turn-Helix, Protein-Ligand Complex, Transcription Regulation, Multidrug Resistance, Single-Stranded Dna, Transcription-Dna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  I. Birukou, C. E. Newman, R. G. Brennan
S. Aureus Mepr F27L Mutant Bound To Oligodeoxyribonucleotid
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - MARR FAMILY REGULATORY PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: MEPR
    Mutation: YES
    Organism Scientific: STAPHYLOCOCCUS AUREUS
    Organism Taxid: 1280
    Synonym: MARR FAMILY TRANSCRIPTIONAL REGULATOR,MEPA/MEPB REPRESSOR AND AUTOREGULATOR,MEPR
 
Molecule 2 - DNA (5'-D(*CP*GP*TP*TP*A)-3')
    Chains: B
    Engineered: YES
    Organism Scientific: SYNTHETIC CONSTRUCT
    Organism Taxid: 32630
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (2x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric Unit (1, 1)
No.NameCountTypeFull Name
1GOL1Ligand/IonGLYCEROL
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1GOL2Ligand/IonGLYCEROL

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:25 , ASP A:28 , THR A:30 , GLN A:45 , ASP A:46 , HOH A:352 , HOH A:369 , HOH A:376binding site for residue GOL A 201

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5FB2)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5FB2)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5FB2)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5FB2)

(-) Exons   (0, 0)

(no "Exon" information available for 5FB2)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:138
                                                                                                                                                                          
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh.....hhhhhhhhhh.hhhhhhhhhhhhhhh..eeeeee..eeeeeeeeehhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5fb2 A   2 EFTYSYLFRMISHEMKQKADQKLEQLDITNEQGHTLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRNLERKKLIYRYVDAQDTRRKNIGLTTSGIKLVEAFTSIFDEMEQTLVSQLSEEENEQMKANLTKMLSSLQ 139
                                    11        21        31        41        51        61        71        81        91       101       111       121       131        


Chain B from PDB  Type:DNA  Length:5
                                     
                 5fb2 B   4 CGTTA   8
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5FB2)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5FB2)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5FB2)

(-) Gene Ontology  (4, 4)

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  5fb2
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  Q5Y812_STAAU | Q5Y812
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  Q5Y812_STAAU | Q5Y812
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        Q5Y812_STAAU | Q5Y812: 5f6f 5ffx
UniProtKB/TrEMBL
        Q5Y812_STAAU | Q5Y812: 4l9j 4l9n 4l9t 4l9v 4ld5 4lll 4lln 5ffz

(-) Related Entries Specified in the PDB File

5ffz