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Asym./Biol. Unit  (Jmol Viewer)

(-) Description

Title :  COHESIN SUBUNIT PDS5
 
Authors :  B. -G. Lee, M. Jansma, K. Nasmyth, J. Lowe
Date :  27 Nov 15  (Deposition) - 20 Apr 16  (Release) - 20 Apr 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.20
Chains :  Asym./Biol. Unit :  A
Keywords :  Heat Repeat Cohesin Subunit, Cell Cycle (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  B. G. Lee, M. B. Roig, M. Jansma, N. Petela, J. Metson, K. Nasmyth, J. Low
Crystal Structure Of The Cohesin Gatekeeper Pds5 And In Complex With Kleisin Scc1.
Cell Rep V. 14 2108 2016
PubMed-ID: 26923598  |  Reference-DOI: 10.1016/J.CELREP.2016.02.020

(-) Compounds

Molecule 1 - COHESIN SUBUNIT PDS5,COHESIN SUBUNIT PDS5, COHESIN SUBUNIT PDS5,KLTH0D07062P,COHESIN SUBUNIT PDS5,COHESIN SUBUNIT PDS5, COHESIN SUBUNIT PDS5,KLTH0D07062P,COHESIN SUBUNIT PDS5,COHESIN SUBUNIT PDS5, COHESIN SUBUNIT PDS5,KLTH0D07062P,COHESIN SUBUNIT PDS5,COHESIN SUBUNIT PDS5, COHESIN SUBUNIT PDS5
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PHIS17
    Expression System Taxid: 469008
    Expression System Variant: C41
    Expression System Vector Type: PLASMID
    Gene: PDS5, KLTH0D07062G
    Organism Common: YEAST
    Organism Scientific: LACHANCEA THERMOTOLERANS, LACHANCEA THERMOTOLERANS (STRAIN ATCC 56472 / CBS 6340 / NRRL Y-8284)
    Organism Taxid: 381046, 559295
    Strain: ATCC 56472 / CBS 6340 / NRRL Y-8284

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 40)

Asymmetric/Biological Unit (1, 40)
No.NameCountTypeFull Name
1UNK40Mod. Amino Acid

(-) Sites  (0, 0)

(no "Site" information available for 5F0N)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5F0N)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Leu A:806 -Pro A:807
2Tyr A:935 -Pro A:936

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5F0N)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5F0N)

(-) Exons   (0, 0)

(no "Exon" information available for 5F0N)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:1038
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhh...hhhhhhhhh.hhhhhh...hhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhh...hhhhhh...hhhhhhhhhh....hhhhh...hhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhh...ee..ee..hhhhhhhhhhhhhh...hhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhh..hhhhhh.hhhhhhhhh...hhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh..hhhhhhhhhhhhh..hhhhhhhhh.hhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh......hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh.hhhhhh........hhhhhhhhhhhhhhh......hhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhh..hhhhhhhhhhh..hhhhhhhhhhhhh...hhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhh.................hhhhhhh..hhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhh.......hhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhh.hhhhhhhh.hhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                5f0n A    1 xxxxxxxxxxxxxxxxxDLRSLERYRADLIDRKILRNKDHGVRAFAACCLSDILRLYAPDAPYTDKELTEIFRLFLAQLKLLQEPENGYLTQQTYLINNLLEYRSIVILTDLPSSSQLVEELFNIFYSPTNSTIQGNMFTAIGGILGEVISECDSLPMSALKMVFNKFLSHKRAESLDGINYKKDPGFEISLIICQTYSNRLGRHFIKFYSEIMYEVLGESSAYKTLVKIGNLTSELWKYAPELVGSVTGLLYQLLCSDNELFRESATKCVSKMLGTHSLINFAVAHSDTYKIWLSKMADISPHVRQAWVSEIPSILMSRSDLSDDISKGLAKALIDSDHTVRLSAIQTFHEVPVKRLWECLPNAAVFAGLVHLTRETRRDLRDECIDAVARIYTESIESIPKTNENKEIWGVVETIPSACFNLYYINDLEINMKVDLLTFEKFLPLGLSNEEFVQRLLTLLQGFNEKAFSSFYAFNRRQDQMSTVLWKFIEFCEETNSQSPAASLSDTKLIKTVEWISSGFPSHLNVEQILLAFRELNDRRLYRLIKVAVAETSKHLTVRNAVSELFKRLEEPELFRKKNIKIESRFTRDNFSTVFRVLIYRAAPIIFNISNLPSFLNTSNEDEKALKRQLIDNISIIKPGIFKDQVKNLVTIITTLSLAEAMRTVYKISKTFFFQKLEDYAKEGNPLEAKYAIKLLGLAPNAAEYLSEVATAILPLDLKSKHFASNVLVLAEITKMQPQLLEKDSTEIVGLLIKDVLLSNDVVGDEDDQQAWFSDEDIYTGKADALSAKVFSLKLFANKIKVMAPDAHADEMTHAFTERTLKLFFYLVASGGELVSESNTDNYPTPANYQNKLRCCAGLHILKITKIASLSRFIKPQDISKLMNLVEDESLEVRSSFIGRLKDFLGDGSISIKFLPLVFFTAYEPDQALRTSTKMWINYTLSKENFRKGTFFERALPRLIHFIAHHPDVAEGLRLFLTGLTTAIDYLVFYADSVLKASNLALLYYLAGRVRQYxxxxxxxxxxxxxxxxxxxxxxx 2022
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   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5F0N)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5F0N)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5F0N)

(-) Gene Ontology  (14, 14)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Leu A:806 - Pro A:807   [ RasMol ]  
    Tyr A:935 - Pro A:936   [ RasMol ]  
 

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UniProtKB/TrEMBL
        C5DGP8_LACTC | C5DGP8: 5f0o

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