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(-) Description

Title :  CRYSTAL STRUCTURE OF PUTATIVE ASPARTATE RACEMASE FROM SALMONELLA TYPHIMURIUM COMPLEXED WITH SULFATE AND POTASSIUM
 
Authors :  N. Maltseva, Y. Kim, J. Stam, W. F. Anderson, A. Joachimiak, Center For Structural Genomics Of Infectious Diseases (Csgid)
Date :  19 Nov 15  (Deposition) - 02 Dec 15  (Release) - 02 Dec 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.70
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Racemase, Alpha Beta Fold, Structural Genomics, Center For Structural Genomics Of Infectious Diseases, Csgid, Isomerase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  N. Maltseva, Y. Kim, J. Stam, W. F. Anderson, A. Joachimiak
Crystal Structure Of Putative Aspartate Racemase From Salmonella Typhimurium Complexed With Sulfate And Potassium
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PUTATIVE ASPARTATE RACEMASE
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG7
    Expression System Strain: BL21 MAGIC
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Gene: STM4510
    Organism Scientific: SALMONELLA TYPHIMURIUM
    Organism Taxid: 99287
    Strain: LT2 / SGSC1412 / ATCC 700720

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (6, 11)

Asymmetric/Biological Unit (6, 11)
No.NameCountTypeFull Name
1CL1Ligand/IonCHLORIDE ION
2F1Ligand/IonFLUORIDE ION
3FMT1Ligand/IonFORMIC ACID
4GOL2Ligand/IonGLYCEROL
5K4Ligand/IonPOTASSIUM ION
6SO42Ligand/IonSULFATE ION

(-) Sites  (11, 11)

Asymmetric Unit (11, 11)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREMET A:11 , THR A:194 , GLU A:195 , SO4 A:302 , HOH A:421binding site for residue K A 301
02AC2SOFTWAREMET A:11 , ARG A:49 , CYS A:83 , THR A:85 , THR A:124 , LYS A:163 , K A:301 , HOH A:413 , HOH A:417 , HOH A:482binding site for residue SO4 A 302
03AC3SOFTWAREVAL A:24 , GLU A:25 , ARG A:27 , HOH A:480 , HOH A:523binding site for residue K A 303
04AC4SOFTWAREASP A:111 , ARG A:220 , HOH A:441 , HOH A:451 , HIS B:28 , ALA B:29 , SER B:30 , GLN B:34binding site for residue GOL A 304
05AC5SOFTWAREPRO A:113 , SER A:115 , ARG A:164 , HOH A:401 , CYS B:31binding site for residue FMT A 305
06AC6SOFTWARESER A:59 , TYR A:61 , ARG A:62 , HIS B:118binding site for residue CL A 306
07AC7SOFTWAREMET B:11 , THR B:194 , GLU B:195 , SO4 B:302 , F B:303binding site for residue K B 301
08AC8SOFTWAREMET B:11 , ARG B:49 , CYS B:83 , THR B:85 , THR B:124 , LYS B:163 , K B:301 , HOH B:402 , HOH B:406 , HOH B:486binding site for residue SO4 B 302
09AC9SOFTWARECYS B:83 , ASN B:84 , CYS B:193 , THR B:194 , K B:301 , HOH B:402binding site for residue F B 303
10AD1SOFTWAREARG A:224 , ARG B:27 , GLN B:34 , THR B:232 , HOH B:434binding site for residue GOL B 304
11AD2SOFTWAREVAL B:24 , GLU B:25 , ARG B:27 , HOH B:461 , HOH B:515binding site for residue K B 305

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5EVC)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Met A:11 -Gly A:12
2Met B:11 -Gly B:12

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5EVC)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5EVC)

(-) Exons   (0, 0)

(no "Exon" information available for 5EVC)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:237
                                                                                                                                                                                                                                                                             
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........eeee...hhhhhhhhhhhhhhhh...hhhhh..eeeee.....hhhhhhhhh...hhhhhhhhhhhhhhhh..eee...hhhhhhhhhhhhhh..ee.hhhhhhhhh......eeeee.hhhhhhh..hhhhhhhhh.eee..hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh...eeee...hhhhhhh.hhhhh...eeehhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5evc A  -3 QSNAMKHTIGILGGMGPAATADMLEKFVELRHASCDQQHIPLIVSSIPDIPDRTACLLSGGPSPYRYLERYLHMLEDAGAECIVIPCNTAHYWFDDLQNVAKARMISILDATLGDIPPSARHVGLLATNATLATGLYQKKALARGLTLIQPEDAGQALVMQAIYTLKRGDKTAAQALLLPQIDSLIARGAQAIIMGCTEIPLIVAGHERAIACPMIDSTASLVRAAIRWYESWPDTR 233
                                     6        16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       


Chain B from PDB  Type:PROTEIN  Length:238
                                                                                                                                                                                                                                                                              
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhh..eeee...hhhhhhhhhhhhhhhh...hhhhh..eeeee.....hhhhhhhhh...hhhhhhhhhhhhhhh...eee...hhhhhhhhhhhhhh..ee.hhhhhhhhh......eeeee.hhhhhhh..hhhhhhhh..eee..hhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh...eeee...hhhhhhh.........eeehhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5evc B  -5 YFQSNAMKHTIGILGGMGPAATADMLEKFVELRHASCDQQHIPLIVSSIPDIPDRTACLLSGGPSPYRYLERYLHMLEDAGAECIVIPCNTAHYWFDDLQNVAKARMISILDATLGDIPPSARHVGLLATNATLATGLYQKKALARGLTLIQPEDAGQALVMQAIYTLKRGDKTAAQALLLPQIDSLIARGAQAIIMGCTEIPLIVAGHERAIACPMIDSTASLVRAAIRWYESWPDT 232
                                     4        14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5EVC)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5EVC)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5EVC)

(-) Gene Ontology  (9, 9)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Met A:11 - Gly A:12   [ RasMol ]  
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q8ZJZ9_SALTY | Q8ZJZ9: 3s7z 3s81

(-) Related Entries Specified in the PDB File

3s7z THE SAME PROTEIN COMPLEXED WITH DIFFERENT LIGANDS RELATED ID: CSGID-IDP02135 RELATED DB: TARGETTRACK
3s81 THE SAME PROTEIN COMPLEXED WITH DIFFERENT LIGANDS