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(-) Description

Title :  THE CRYSTAL STRUCTURE OF NAP1 IN COMPLEX WITH TBK1
 
Authors :  F. Li, X. Xie, J. Liu, L. Pan
Date :  11 Nov 15  (Deposition) - 28 Sep 16  (Release) - 28 Sep 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.45
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Nap1, Tbk1, Calcoco2, Protein Binding-Transferase Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  F. Li, X. Xie, Y. Wang, J. Liu, X. Cheng, Y. Guo, Y. Gong, S. Hu, L. Pan
Structural Insights Into The Interaction And Disease Mechanism Of Neurodegenerative Disease-Associated Optineuri And Tbk1 Proteins.
Nat Commun V. 7 12708 2016
PubMed-ID: 27620379  |  Reference-DOI: 10.1038/NCOMMS12708

(-) Compounds

Molecule 1 - 5-AZACYTIDINE-INDUCED PROTEIN 2
    Chains: A, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 215-255
    Gene: AZI2, NAP1, TBKBP2
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: NF-KAPPA-B-ACTIVATING KINASE-ASSOCIATED PROTEIN 1,NAK- ASSOCIATED PROTEIN 1,TILP
 
Molecule 2 - SERINE/THREONINE-PROTEIN KINASE TBK1
    Chains: B, D
    EC Number: 2.7.11.1
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 677-729
    Gene: TBK1, NAK
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: NF-KAPPA-B-ACTIVATING KINASE,T2K,TANK-BINDING KINASE 1

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 5)

Asymmetric Unit (1, 5)
No.NameCountTypeFull Name
1GOL5Ligand/IonGLYCEROL
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1GOL2Ligand/IonGLYCEROL
Biological Unit 2 (1, 3)
No.NameCountTypeFull Name
1GOL3Ligand/IonGLYCEROL

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:228 , SER A:231 , ASN A:232 , LEU C:235 , GOL C:301 , HOH C:417 , HOH C:420binding site for residue GOL A 301
2AC2SOFTWAREARG A:228 , GOL A:301 , VAL C:236 , VAL C:239 , HOH C:417 , ALA D:705 , ASN D:708binding site for residue GOL C 301
3AC3SOFTWAREARG C:228 , GLU C:229 , ASN C:232 , HOH C:413 , HOH D:910binding site for residue GOL B 801
4AC4SOFTWAREGLU D:695 , GLU D:696binding site for residue GOL D 801
5AC5SOFTWAREGLU B:685 , GLN C:220 , TRP C:224 , LYS C:227 , HOH C:402 , ARG D:724binding site for residue GOL D 802

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5EP6)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5EP6)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5EP6)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5EP6)

(-) Exons   (0, 0)

(no "Exon" information available for 5EP6)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:36
                                                                    
               SCOP domains ------------------------------------ SCOP domains
               CATH domains ------------------------------------ CATH domains
               Pfam domains ------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------ PROSITE
                 Transcript ------------------------------------ Transcript
                 5ep6 A 215 SSDNMQHAYWELKREMSNLHLVTQVQAELLRKLKTS 250
                                   224       234       244      


Chain B from PDB  Type:PROTEIN  Length:46
                                                                              
               SCOP domains ---------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhheee....... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------- PROSITE
                 Transcript ---------------------------------------------- Transcript
                 5ep6 B 679 SSNTLVEMTLGMKKLKEEMEGVVKELAENNHILERFGSLTMDGGLR 724
                                   688       698       708       718      


Chain C from PDB  Type:PROTEIN  Length:35
                                                                   
               SCOP domains ----------------------------------- SCOP domains
               CATH domains ----------------------------------- CATH domains
               Pfam domains ----------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------- PROSITE
                 Transcript ----------------------------------- Transcript
                 5ep6 C 215 SSDNMQHAYWELKREMSNLHLVTQVQAELLRKLKT 249
                                   224       234       244     


Chain D from PDB  Type:PROTEIN  Length:46
                                                                              
               SCOP domains ---------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhheee....... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------- PROSITE
                 Transcript ---------------------------------------------- Transcript
                 5ep6 D 679 SSNTLVEMTLGMKKLKEEMEGVVKELAENNHILERFGSLTMDGGLR 724
                                   688       698       708       718
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5EP6)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5EP6)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5EP6)

(-) Gene Ontology  (46, 50)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        TBK1_HUMAN | Q9UHD2: 4efo 4eut 4euu 4im0 4im2 4im3 4iw0 4iwo 4iwp 4iwq 5eoa 5eof

(-) Related Entries Specified in the PDB File

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