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(-) Description

Title :  CSL-RITA COMPLEX BOUND TO DNA
 
Authors :  N. H. Tabaja, R. A. Kovall
Date :  26 Oct 15  (Deposition) - 26 Apr 17  (Release) - 26 Apr 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.09
Chains :  Asym./Biol. Unit :  A,B,C,R
Keywords :  Notch, Rbpj, Transcription-Dna Binding Protein-Dna Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  N. H. Tabaja, R. A. Kovall
Csl-Rita Complex Bound To Dna
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - DNA (5'-D(*AP*AP*TP*CP*TP*TP*TP*CP*CP*CP*AP*CP*AP*GP*T)- 3')
    Chains: B
    Engineered: YES
    Organism Scientific: SYNTHETIC CONSTRUCT
    Organism Taxid: 32630
    Synthetic: YES
 
Molecule 2 - RECOMBINING BINDING PROTEIN SUPPRESSOR OF HAIRLESS
    Chains: C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: RESIDUES 53-474
    Gene: RBPJ, IGKJRB1, IGKRSBP, RBPSUH
    Organism Common: MOUSE
    Organism Scientific: MUS MUSCULUS
    Organism Taxid: 10090
    Synonym: J KAPPA-RECOMBINATION SIGNAL-BINDING PROTEIN,RBP-J KAPPA
 
Molecule 3 - HRITA
    Chains: R
    Engineered: YES
    Organism Scientific: SYNTHETIC CONSTRUCT
    Organism Taxid: 32630
    Synthetic: YES
 
Molecule 4 - DNA (5'-D(*TP*TP*AP*CP*TP*GP*TP*GP*GP*GP*AP*AP*AP*GP*A)- 3')
    Chains: A
    Engineered: YES
    Organism Scientific: SYNTHETIC CONSTRUCT
    Organism Taxid: 32630
    Synthetic: YES

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCR

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 26)

Asymmetric/Biological Unit (2, 26)
No.NameCountTypeFull Name
1BU17Ligand/Ion1,4-BUTANEDIOL
2EDO19Ligand/Ion1,2-ETHANEDIOL

(-) Sites  (26, 26)

Asymmetric Unit (26, 26)
No.NameEvidenceResiduesDescription
01AC1SOFTWARETHR C:469 , TYR C:470 , THR C:471binding site for residue EDO C 501
02AC2SOFTWARELYS C:212 , THR C:359 , ASP C:360 , LYS C:361binding site for residue EDO C 502
03AC3SOFTWAREASP C:252 , ASP C:254 , GLU C:255 , ARG C:264binding site for residue EDO C 503
04AC4SOFTWAREARG C:69 , PRO C:451 , VAL C:452 , THR C:464 , SER C:465 , LEU C:466 , THR C:467 , HOH C:668binding site for residue EDO C 504
05AC5SOFTWAREARG C:69 , ASP C:71 , GLY C:103 , SER C:104 , HOH C:643 , HOH C:731binding site for residue EDO C 505
06AC6SOFTWARELYS C:108 , GLU C:111 , GLN C:112 , ARG C:115 , HOH C:619 , HOH C:716binding site for residue EDO C 506
07AC7SOFTWARELYS C:185 , ARG C:186 , HOH C:706binding site for residue EDO C 507
08AC8SOFTWAREVAL C:224binding site for residue EDO C 508
09AC9SOFTWARELEU C:57 , THR C:58 , GLU C:416 , EDO C:517 , HOH C:613binding site for residue EDO C 509
10AD1SOFTWAREVAL C:181 , LEU C:183 , TYR C:364 , VAL C:380 , HOH C:642 , HOH C:741binding site for residue EDO C 510
11AD2SOFTWAREARG C:227 , SER C:240 , GLU C:329binding site for residue EDO C 511
12AD3SOFTWARELEU C:250 , ASP C:265 , GLY C:266 , TYR C:267 , HIS C:269 , GLN C:272binding site for residue EDO C 512
13AD4SOFTWAREARG C:56 , ASN C:407 , ARG C:409 , TRP C:411 , GLU C:416 , VAL C:455 , ARG C:456 , ASN C:457 , HOH C:652 , HOH C:671binding site for residue EDO C 513
14AD5SOFTWAREPHE C:236 , HIS C:237 , ARG C:330 , ILE C:331 , HOH C:707 , TRP R:945binding site for residue EDO C 514
15AD6SOFTWAREASN C:142 , LYS C:146 , CYS C:149 , THR C:150 , HOH C:719binding site for residue EDO C 515
16AD7SOFTWAREGLY C:103 , SER C:104 , TRP C:106 , LYS C:107 , BU1 C:520binding site for residue EDO C 516
17AD8SOFTWARETHR C:58 , ARG C:59 , GLU C:60 , EDO C:509binding site for residue EDO C 517
18AD9SOFTWAREGLY C:87 , ASN C:88 , GLU C:89 , TYR C:155binding site for residue EDO C 518
19AE1SOFTWAREGLN C:72 , GLY C:105 , LYS C:108 , LYS C:109 , TYR C:367 , GLU C:368 , HOH C:627binding site for residue BU1 C 519
20AE2SOFTWARELEU C:101 , TRP C:106 , GLN C:124 , LEU C:143 , LYS C:146 , ASN C:147 , EDO C:516binding site for residue BU1 C 520
21AE3SOFTWAREILE C:131 , TYR C:155 , SER C:157 , HOH C:602binding site for residue BU1 C 521
22AE4SOFTWAREGLU C:363 , THR C:365 , TYR C:462 , SER C:463binding site for residue BU1 C 522
23AE5SOFTWARELYS C:80 , ASP C:204 , THR C:211 , GLN C:308 , SER C:358 , HOH C:633 , HOH C:691binding site for residue BU1 C 523
24AE6SOFTWAREARG C:56 , THR C:58 , MET C:370binding site for residue BU1 C 524
25AE7SOFTWARELEU C:77 , MET C:102 , VAL C:280binding site for residue BU1 C 525
26AE8SOFTWARELEU R:944 , THR R:946binding site for residue EDO R 1001

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5EG6)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Cys C:94 -Pro C:95
2Thr C:378 -Pro C:379

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5EG6)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5EG6)

(-) Exons   (0, 0)

(no "Exon" information available for 5EG6)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:DNA  Length:15
                                               
                 5eg6 A   1 TTACTGTGGGAAAGA  15
                                    10     


Chain B from PDB  Type:DNA  Length:15
                                               
                 5eg6 B   1 AATCTTTCCCACAGT  15
                                    10     


Chain C from PDB  Type:PROTEIN  Length:413
                                                                                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhh..eeeeeeee.eee..............eeeee.hhhhhhhhhhhhh..hhhhhheeeeee......eee......eee.............ee..eeeeee....eeeeee...eeee..................eeeeeee......eeeeee..eeeee......eeeeee........eeee.........eeeeee.........eeeeeee..eee...........eeeeee.....eeeeee..eeeeee.ee......eee.hhhhheeeeeeeeeeeeeee.............eeeeeee......eeeeeee.....eeeee..ee..eeeee..eeeee..hhhhh..........eeeeeeeee...eeeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5eg6 C  53 PPKRLTREAMRNYLKERGDQTVLILHAKVAQKSYGNEKRFFCPPPCVYLMGSGWKKKKEQMERDGCSEQESQPCAFIGIGNSEMQQLNLEGKNYCTAKTLYISDSDKRKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPSKQSLKNADLCIASGTKVALFNRLTVSTRYLHVEGGNFHASSQQWGAFYIHLLDDDESEGEEFTVRDGYIHYGQTVKLVCSVTGMALPRLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCLSQERIIQFQATPCPKEQNKEMINDGASWTIISTDKAEYTFYEGMGPVLAPVTPVPVVESLQLNGGDVAMLELTGQNFTPNLRVWFGDVEAETMYRCGESMLCVVPDISAFREGWRWVRQPVQVPVTLVRNDGVIYSTSLTFTYTPE 473
                                    62        72        82        92       102       112       122       132 ||    144       154       164       174       184       194|      206       216  ||   229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389|      400       410       420       430       440       450       460       470   
                                                                                                           134|                                                      194|                   219|                                                                                                                                                                   389|                                                                                  
                                                                                                            137                                                       197                    223                                                                                                                                                                    391                                                                                  


Chain R from PDB  Type:PROTEIN  Length:16
                                                
               SCOP domains ---------------- SCOP domains
               CATH domains ---------------- CATH domains
               Pfam domains ---------------- Pfam domains
         Sec.struct. author ..eeee.......... Sec.struct. author
                 SAPs(SNPs) ---------------- SAPs(SNPs)
                    PROSITE ---------------- PROSITE
                 Transcript ---------------- Transcript
                 5eg6 R 936 DAAKLRALLWTPPPTP 951
                                   945
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5EG6)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5EG6)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5EG6)

(-) Gene Ontology  (86, 86)

Asymmetric/Biological Unit(hide GO term definitions)

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        SUH_MOUSE | P31266: 3brg 3iag 4j2x

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