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(-) Description

Title :  CRYSTAL STRUCTURE OF THE ARCHAEAL TRNA M2G/M22G10 METHYLTRANSFERASE (ATRM11) FROM THERMOCOCCUS KODAKARENSIS
 
Authors :  A. Hirata
Date :  11 Oct 15  (Deposition) - 06 Jul 16  (Release) - 06 Jul 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.70
Chains :  Asym./Biol. Unit :  A
Keywords :  Trna Methyltransferase, Rfm Domain, Nfld, Thump Domain, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Hirata, S. Nishiyama, T. Tamura, A. Yamauchi, H. Hori
Structural And Functional Analyses Of The Archaeal Trna M2G/M22G10 Methyltransferase Atrm11 Provide Mechanistic Insights Into Site Specificity Of A Trna Methyltransferase That Contains Common Rna-Binding Modules.
Nucleic Acids Res. 2016
PubMed-ID: 27325738  |  Reference-DOI: 10.1093/NAR/GKW561

(-) Compounds

Molecule 1 - N2, N2-DIMETHYLGUANOSINE TRNA METHYLTRANSFERASE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET-30A
    Expression System Strain: ROSETTA 2 (DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: TK0981
    Organism Scientific: THERMOCOCCUS KODAKARENSIS (STRAIN ATCC BAA-918 / JCM 12380 / KOD1)
    Organism Taxid: 69014
    Strain: ATCC BAA-918 / JCM 12380 / KOD1

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5E71)

(-) Sites  (0, 0)

(no "Site" information available for 5E71)

(-) SS Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1A:96 -A:131

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5E71)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5E71)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5E71)

(-) Exons   (0, 0)

(no "Exon" information available for 5E71)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:323
                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee...hhhhhhhhhhhhhhhhh.eeeeee..eeeee.hhhhhhhhh....eeeeeeeeeee.hhhhhhhhhhh........eeeeeee.........hhhhhhhhhhhh...........eeeeeee...eeeeeeeee.hhhhhhhhhhhhh........hhhhhhhhhhhh....eeee.....hhhhhhhhhh..eeeeee.hhhhhhhhhhhhhhh....eeeee.hhhhhhhhh....eeeeee.....hhhhhhhhhhhhhhhheeeeeeeeeeee...hhhhhhhhh..eeeeeeeeeee..eeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5e71 A   1 MLYVEILGNLPEMARDEVKAMLELGGGEIIGQDYLFLKVDAGEKAFPFLDRLGLAHEYGLLLVEADSVEELLQKAGEVEWPIKGAFKVDTETMANCRHDVLDLPRKLGAVIHAQGFRVNLSKPDTVVRVYCGERLYAGIRLRYFDPKDFEKRKAHHRPFFRPISLHPRVSRALVNLTKATREILDPFMGAGGILIEAGLLGLRVYGVDIRPEMVEGAETNLKHYGVRDYTLKLGDATRLEDLFPDKKFEAVATDPPYRKRDELYRKALRSIYNVLEDGGRLAIAFPTDFNGKAEAEAVGFRTLGRYYQRVHKSLERYFYVFEK 331
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250      |268       278       288       298       308       318       328   
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5E71)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5E71)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5E71)

(-) Gene Ontology  (7, 7)

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 Related Entries

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UniProtKB/TrEMBL
        Q5JID5_THEKO | Q5JID5: 5e72

(-) Related Entries Specified in the PDB File

5e72