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(-) Description

Title :  CRYSTAL STRUCTURE OF H5 HEMAGGLUTININ MUTANT (N224K, Q226L, N158D AND L133A DELETION) FROM THE INFLUENZA VIRUS A/CHICKEN/VIETNAM/NCVD-093/2008 (H5N1)
 
Authors :  X. Zhu, I. A. Wilson
Date :  01 Oct 15  (Deposition) - 02 Dec 15  (Release) - 09 Dec 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.70
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (3x)
Keywords :  H5N1 Influenza Virus, Hemagglutinin, Receptor Binding Specificity, Transmission, Glycan Complex, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  X. Zhu, K. Viswanathan, R. Raman, W. Yu, R. Sasisekharan, I. A. Wilson
Structural Basis For A Switch In Receptor Binding Specificity Of Two H5N1 Hemagglutinin Mutants.
Cell Rep V. 13 1683 2015
PubMed-ID: 26586437  |  Reference-DOI: 10.1016/J.CELREP.2015.10.027

(-) Compounds

Molecule 1 - HEMAGGLUTININ
    Chains: A
    Engineered: YES
    Expression System: TRICHOPLUSIA NI
    Expression System Plasmid: PFASTBAC-HT
    Expression System Strain: HI5
    Expression System Taxid: 7111
    Expression System Vector Type: BACULOVIRUS
    Fragment: UNP RESIDUES 17-346
    Gene: HA
    Mutation: YES
    Organism Scientific: INFLUENZA A VIRUS (A/CHICKEN/VIETNAM/NCVD- 093/2008(H5N1))
    Organism Taxid: 581024
    Strain: A/CHICKEN/VIETNAM/NCVD-093/2008(H5N1)
    Synonym: HEMAGGLUTININ HA1 CHAIN
 
Molecule 2 - HEMAGGLUTININ
    Chains: B
    Engineered: YES
    Expression System: TRICHOPLUSIA NI
    Expression System Plasmid: BACULOVIRUS
    Expression System Strain: HI5
    Expression System Taxid: 7111
    Fragment: UNP RESIDUES 347-521
    Gene: HA
    Organism Scientific: INFLUENZA A VIRUS
    Organism Taxid: 581024
    Strain: A/CHICKEN/VIETNAM/NCVD-093/2008(H5N1)
    Synonym: HEMAGGLUTININ HA2 CHAIN

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (3x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 3)

Asymmetric Unit (1, 3)
No.NameCountTypeFull Name
1NAG3Ligand/IonN-ACETYL-D-GLUCOSAMINE
Biological Unit 1 (1, 9)
No.NameCountTypeFull Name
1NAG9Ligand/IonN-ACETYL-D-GLUCOSAMINE

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN A:33binding site for Mono-Saccharide NAG A 1001 bound to ASN A 33
2AC2SOFTWAREASN A:167 , THR A:242binding site for Mono-Saccharide NAG A 1002 bound to ASN A 167
3AC3SOFTWAREASN A:278 , ASN A:289binding site for Mono-Saccharide NAG A 1003 bound to ASN A 289

(-) SS Bonds  (6, 6)

Asymmetric Unit
No.Residues
1A:14 -B:137
2A:52 -A:277
3A:64 -A:76
4A:97 -A:139
5A:281 -A:305
6B:144 -B:148

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5E32)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5E32)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5E32)

(-) Exons   (0, 0)

(no "Exon" information available for 5E32)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:323
                                                                                                                                                                                                                                                                                                                                                                    
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee.......ee.......ee...eee.ee......eeee.....ee....hhhhhhhhhhhhhhhh.......eee...........eee.hhhhhhhhhh.eeeeeeee..hhhhh..ee....hhhhh..........eee.ee.......eeeeee......eeeeeeeee..hhhhhhhhhh.....eeee....eeee...............eeeeeeeee....eeeeee...eeee.eeeeeeee....eee....eeeeee.eee..ee......ee......ee...ee......eee....... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5e32 A    8 DPGDQICVGYHANNSTEQVDTIMEKNITVTHAQDILEKTHNGKLCNLNGVKPLILKDCSVAGWLLGNPMCDEFLNVSEWSYIVEKASPANGLCYPGDFNDYEELKHLLSRINHFEKIKIIPKSYWSNHETSGVSSACSYLENPSFFRNVVWLTKKDNTYPPIKVNYTNANQKDLLVLWGIHHPNNEAEQKMIYQNLNTYVSVGTSTLNQRLVPKIATRSKVKGLSGRMDFFWTILKPNDTINFDSNGNFIAPEYAYKIVKKGDSAIMKSELEYGNCNTKCQTPIGAINSSMPFHNIHPLTIGECPKYVKSNRLVLATGLRNAP  324
                                    17        27        37        47        56        66        76       |85        95 |     104       114       124 ||    132       142       152       162       172       182       192       202       212       222       232       242       252       261       271       281       291       301       311       321   
                                                                          55A                          83A           96A                          125A|                                                                                                                                    260A                                                                
                                                                                                                                                   125B                                                                                                                                                                                                        


Chain B from PDB  Type:PROTEIN  Length:175
                                                                                                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....................eeeeee....eeeee.hhhhhhhhhhhhhhhhhhhhh...............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eee....eeee.......hhhhhh.....hhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5e32 B    1 GLFGAIAGFIEGGWQGMVDGWYGYHHSNEQGSGYAADKESTQKAIDGITNKINSIIDKMNTQFEAVGREFNNLERRIENLNKKMEDGFLDVWTYNAELLVLMENERTLDFHDSNVKNLYEKVRLQLRDNAKELGNGCFEFYHKCDNECMESVKNGTYDYPQYSEEARLNREEISG  175
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5E32)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5E32)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5E32)

(-) Gene Ontology  (17, 17)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        C4P282_9INFA | C4P282: 5e34 5e35

(-) Related Entries Specified in the PDB File

5e2y 5e2z 5e30 5e34 5e35