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(-) Description

Title :  CRYSTAL STRUCTURE OF BETA-LACTAMASE PRECURSOR BLAA FROM YERSINIA ENTEROCOLITICA
 
Authors :  Y. Kim, G. Joachimiak, M. Endres, G. Babnigg, A. Joachimiak, Midwest C Structural Genomics (Mcsg)
Date :  01 Oct 15  (Deposition) - 28 Oct 15  (Release) - 28 Oct 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Beta-Lactamase, Structural Genomics, Psi-Biology, Midwest Center For Structural Genomics, Mcsg, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Kim, G. Joachimiak, M. Endres, G. Babnigg, A. Joachimiak, Midwest Center For Structural Genomics (Mcsg)
Crystal Structure Of Beta-Lactamase Precursor Blaa From Yersinia Enterocolitica
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - BETA-LACTAMASE
    Chains: A, B
    EC Number: 3.5.2.6
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Fragment: UNP RESIDUES 28-294
    Gene: BLAA, YE2019
    Organism Taxid: 393305
    Strain: NCTC 13174 / 8081

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 12)

Asymmetric Unit (1, 12)
No.NameCountTypeFull Name
1MSE12Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 6)
No.NameCountTypeFull Name
1MSE6Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 6)
No.NameCountTypeFull Name
1MSE6Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 5E2E)

(-) SS Bonds  (1, 1)

Asymmetric Unit
No.Residues
1A:92 -B:92

(-) Cis Peptide Bonds  (3, 3)

Asymmetric Unit
No.Residues
1Glu A:143 -Pro A:144
2Thr A:229 -Lys A:230
3Glu B:143 -Pro B:144

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5E2E)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5E2E)

(-) Exons   (0, 0)

(no "Exon" information available for 5E2E)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:260
                                                                                                                                                                                                                                                                                                    
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhh.eeeeeeeee.....eeee.....ee...hhhhhhhhhhhhhhhhhhhhhh.ee..hhhhh...hhhhhhh....eehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhh........eehhhhhhhhhhhhhh....hhhhhhhhhhhhhh......hhhhhh....eeeeeeeee...eeeeeeeee......eeeeeeeee.......hhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5e2e A   6 SLDKQLAALEHSANGRLGIAmINSGAGTKILYRGAQRFPFCSTFKFmLAAAVLDQSQSQPNLLNKHINYHESDLLSYAPITRKNLACGmTVSELCAATIQYSDNTAANLLIKELGGLAAVNQFARSIGDQmFRLDRWEPDLNTALPNDPRDTTTPAAmAASmNKLVLGDALRPAQRSQLAAWLKGNTTGDATIRAGAPTDWIVGDKTGSGDYGTTNDIAVLWPTKGAPIVLVVYFTQREKDAKPRRDVLASATQIILSQI 265
                                    15        25|       35        45      | 55        65        75        85        95       105       115       125       135|      145       155       165 |     175       185       195       205       215       225       235       245       255       265
                                               26-MSE                    52-MSE                                    94-MSE                                   136-MSE                    163-MSE                                                                                                  
                                                                                                                                                                                           167-MSE                                                                                              


Chain B from PDB  Type:PROTEIN  Length:260
                                                                                                                                                                                                                                                                                                    
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhh.eeeeeeeee.....eeee.....ee...hhhhhhhhhhhhhhh........ee..hhhhh...hhhhhhh....eehhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhh........eehhhhhhhhhhhhhh....hhhhhhhhhhhhhh......hhhhhh....eeeeeeeee...eeeeeeeee......eeeeeeeee.......hhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5e2e B   6 SLDKQLAALEHSANGRLGIAmINSGAGTKILYRGAQRFPFCSTFKFmLAAAVLDQSQSQPNLLNKHINYHESDLLSYAPITRKNLACGmTVSELCAATIQYSDNTAANLLIKELGGLAAVNQFARSIGDQmFRLDRWEPDLNTALPNDPRDTTTPAAmAASmNKLVLGDALRPAQRSQLAAWLKGNTTGDATIRAGAPTDWIVGDKTGSGDYGTTNDIAVLWPTKGAPIVLVVYFTQREKDAKPRRDVLASATQIILSQI 265
                                    15        25|       35        45      | 55        65        75        85        95       105       115       125       135|      145       155       165 |     175       185       195       205       215       225       235       245       255       265
                                               26-MSE                    52-MSE                                    94-MSE                                   136-MSE                    163-MSE                                                                                                  
                                                                                                                                                                                           167-MSE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5E2E)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5E2E)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5E2E)

(-) Gene Ontology  (4, 4)

Asymmetric Unit(hide GO term definitions)

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  Cis Peptide Bonds
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