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(-) Description

Title :  CRYSTAL STRUCTURE OF ANDES VIRUS NUCLEOPROTEIN
 
Authors :  Y. Guo, W. M. Wang, Z. Y. Lou
Date :  28 Sep 15  (Deposition) - 02 Dec 15  (Release) - 20 Jan 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.25
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Hantavirus, Andes Virus, Nucleoprotein, Nuclear Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Guo, W. Wang, Y. Sun, C. Ma, X. Wang, X. Wang, P. Liu, S. Shen, B. Li, J. Lin, F. Deng, H. Wang, Z. Lou
Crystal Structure Of The Core Region Of Hantavirus Nucleocapsid Protein Reveals The Mechanism For Ribonucleoprotein Complex Formation
J. Virol. V. 90 1048 2015
PubMed-ID: 26559827  |  Reference-DOI: 10.1128/JVI.02523-15

(-) Compounds

Molecule 1 - NUCLEOPROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 117-399
    Organism Scientific: ANDES VIRUS
    Organism Taxid: 46607
    Synonym: NUCLEOCAPSID PROTEIN

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5E04)

(-) Sites  (0, 0)

(no "Site" information available for 5E04)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5E04)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Val A:168 -Asn A:169
2Thr A:183 -Ala A:184
3Pro A:248 -Lys A:249
4Ser B:344 -Lys B:345

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5E04)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5E04)

(-) Exons   (0, 0)

(no "Exon" information available for 5E04)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:281
                                                                                                                                                                                                                                                                                                                         
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh....eeee.....eee....eee..eeee..........hhhhhhhhhhhhhhhhhhhh...hhhhhh.hhhhhh.hhhhhhhhhhhh............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh............hhhhhhh......hhhhh...hhhhhhhhhhhhhhhhhhhhhhh.............hhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5e04 A 116 SADWKAIGAYILGFAIPIILKALYMLSTRGRQTVKDNKGTRIRFKDDSSFEEVNGIRKPKHLYVSMPTAQKAEEITPGRFRTIACGLFPAQVKARNIISPVMGVIGFGFFVKDWMDRIEEFLAAECPFLPKPKVASEAFMSTNKMYFLNRQRQVNESKVQDIIDLIDHAETESATLFTEIATPHSVWVFACAPDRCPPTALYVAGVPELGAFFSILQDMRNTIMASKSVGTAEEKLKKKSAFYQSYLRRTQSMGIQLDQKIIILYMLSWGKEAVNHFHLGD 399
                                   125       135       145       155       165       175       185|      198       208       218       228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398 
                                                                                               185|                                                                                                                                                                                                                  
                                                                                                189                                                                                                                                                                                                                  


Chain B from PDB  Type:PROTEIN  Length:265
                                                                                                                                                                                                                                                                                                         
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhh.hhhhhhhhhhhhhhh.eeee.....eeee..eeee..eeee......hhhhhhhhhhhhhhhhhhhh...hhhhhh.hhhhhh.hhhhhhhhhhhh............hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh............hhhhhh......hhhhh...hhhhhhhhhhhhhhhhhhhhh........hhhhhh.hhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5e04 B 116 SADWKAIGAYILGFAIPIILKALYMLSTRTRIRFKDDSSFEEVNGIRKPKHLYVSMKAEEITPGRFRTIACGLFPAQVKARNIISPVMGVIGFGFFVKDWMDRIEEFLAAECPFLPKPKVASEAFMSTNKMYFLNRQRQVNESKVQDIIDLIDHAETESATLFTEIATPHSVWVFACAPDRCPPTALYVAGVPELGAFFSILQDMRNTIMASKSVGTAEEKLKKKSAFYQSYLRRTQSMGIQLDQKIIILYMLSWGKEAVNHFHL 397
                                   125       135       155       165       175     ||192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392     
                                                      144|                       181|                                                                                                                                                                                                                
                                                       155                        189
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5E04)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5E04)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5E04)

(-) Gene Ontology  (5, 5)

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  Cis Peptide Bonds
    Pro A:248 - Lys A:249   [ RasMol ]  
    Ser B:344 - Lys B:345   [ RasMol ]  
    Thr A:183 - Ala A:184   [ RasMol ]  
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