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(-) Description

Title :  CRYSTAL OF SELENOMETHIONINE SUBSTITUTED AMTR FROM CORYNEBACTERIUM GLUTAMICUM
 
Authors :  C. Palanca, V. Rubio
Date :  24 Sep 15  (Deposition) - 13 Jan 16  (Release) - 30 Mar 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.65
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Tetr Family Regulator, Dna Binding Protein, Nitrogen Master Regulator, Pii, Glnk, Glnb, Tfr (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Palanca, V. Rubio
Structure Of Amtr, The Global Nitrogen Regulator Of Corynebacterium Glutamicum, In Free And Dna-Bound Forms.
Febs J. V. 283 1039 2016
PubMed-ID: 26744254  |  Reference-DOI: 10.1111/FEBS.13643

(-) Compounds

Molecule 1 - TETR FAMILY TRANSCRIPTIONAL REGULATOR
    Atcc: 13869
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PLIC-SGC1
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: KIQ_008455
    Organism Scientific: CORYNEBACTERIUM GLUTAMICUM ATCC 14067
    Organism Taxid: 1079988

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 10)

Asymmetric/Biological Unit (2, 10)
No.NameCountTypeFull Name
1CA2Ligand/IonCALCIUM ION
2MSE8Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELYS A:111 , ARG A:170 , ARG A:171 , ASN A:172 , ASP A:173 , GLY A:174 , LYS A:175binding site for residue CA A 301
2AC2SOFTWARELYS B:111 , ARG B:170 , ARG B:171 , ASN B:172 , ASP B:173 , GLY B:174 , LYS B:175binding site for residue CA B 301

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5DY1)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5DY1)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5DY1)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5DY1)

(-) Exons   (0, 0)

(no "Exon" information available for 5DY1)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:202
                                                                                                                                                                                                                                          
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhh....hhhhhhhhhh.hhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhh.......hhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5dy1 A  19 NPREEILDASAELFTHQGFATTSTHQIADAVGIRQASLYYHFPSKTEIFLTLLKSTVEPSTVLAEDLSILDAGPEmRLWAIVASEVRLLLSTKWNVGRLYQLPIVGSEEFAEYHSQREALTNIFRDLATEIVGDDPRAELPFHITmSVIEmRRNDGKIPSPLSADSLPETAImLADASLAVLGASLPADRVEKTLELIKQAD 220
                                    28        38        48        58        68        78        88     |  98       108       118       128       138       148       158     | 168|      178       188  |    198       208       218  
                                                                                                      94-MSE                                                               164-MSE|                   191-MSE                         
                                                                                                                                                                                169-MSE                                               


Chain B from PDB  Type:PROTEIN  Length:201
                                                                                                                                                                                                                                         
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhh....hhhhhhhhhh.hhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhh.......hhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5dy1 B  20 PREEILDASAELFTHQGFATTSTHQIADAVGIRQASLYYHFPSKTEIFLTLLKSTVEPSTVLAEDLSILDAGPEmRLWAIVASEVRLLLSTKWNVGRLYQLPIVGSEEFAEYHSQREALTNIFRDLATEIVGDDPRAELPFHITmSVIEmRRNDGKIPSPLSADSLPETAImLADASLAVLGASLPADRVEKTLELIKQAD 220
                                    29        39        49        59        69        79        89    |   99       109       119       129       139       149       159    |  169       179       189 |     199       209       219 
                                                                                                     94-MSE                                                               164-MSE|                   191-MSE                         
                                                                                                                                                                               169-MSE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5DY1)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5DY1)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5DY1)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 5DY1)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        A0A072Z681_C | A0A072Z681: 5dxz 5dy0

(-) Related Entries Specified in the PDB File

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