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(-) Description

Title :  CRYSTAL STRUCTURE OF THE UNLIGANDED GEOSMIN SYNTHASE N-TERMINAL DOMAIN FROM STREPTOMYCES COELICOLOR
 
Authors :  P. M. Lombardi, G. G. Harris, T. A. Pemberton, T. Matsui, T. M. Weiss, K. E M. Koksal, F. V. Murphy, L. S. Vedula, W. K. Chou, D. E. Cane, D. W. Christ
Date :  22 Sep 15  (Deposition) - 25 Nov 15  (Release) - 23 Dec 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.20
Chains :  Asym./Biol. Unit :  A
Keywords :  Terpene Cyclase, Lyase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  G. G. Harris, P. M. Lombardi, T. A. Pemberton, T. Matsui, T. M. Weiss, K. E. Cole, M. Koksal, F. V. Murphy, L. S. Vedula, W. K. Chou, D. E. Cane, D. W. Christianson
Structural Studies Of Geosmin Synthase, A Bifunctional Sesquiterpene Synthase With Alpha Alpha Domain Architecture That Catalyzes A Unique Cyclization-Fragmentation Reaction Sequence.
Biochemistry V. 54 7142 2015
PubMed-ID: 26598179  |  Reference-DOI: 10.1021/ACS.BIOCHEM.5B01143

(-) Compounds

Molecule 1 - GERMACRADIENOL/GEOSMIN SYNTHASE
    Chains: A
    EC Number: 4.2.3.22, 4.2.3.75, 4.1.99.16
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET-21D
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: CYC2, SCO6073, SC9B1.20
    Organism Scientific: STREPTOMYCES COELICOLOR (STRAIN ATCC BAA-471 / A3(2) / M145)
    Organism Taxid: 100226
    Strain: ATCC BAA-471 / A3(2) / M145
    Synonym: SCGS

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5DW7)

(-) Sites  (0, 0)

(no "Site" information available for 5DW7)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5DW7)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5DW7)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5DW7)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5DW7)

(-) Exons   (0, 0)

(no "Exon" information available for 5DW7)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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Chain A from PDB  Type:PROTEIN  Length:309
                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..................hhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5dw7 A   4 QPFQLPHFYLPHPARLNPHLDEARAHSTTWAREMGMLEGSGVWEQSDLEAHDYGLLCAYTHPDCDGPALSLITDWYVWVFFFDDHFLEKYKRSQDRLAGKAHLDRLPLFMPLPEPRNPVEAGLADLWTRTVPAMSADWRRRFAVATEHLLNESMWELNPVEYIEMRRKVGGAPWSAGLVEYATAEVPAAVAGTRPLRVLMETFSDAVHLRNDLFSYQREVEDEGELSNGVLVLETFFGCTTQEAADLVNDVLTSRLHQFEHTAFTEVPAVALEKGLTPLEVAAVGAYTKGLQDWQSGGHEWHMRSSRYM 327
                                    13        23        33        43        53        63        73        83        93       103       113 ||    129       139       149       159      |178       188       198       208       218       228       238       248       258       268       278       288       298       308       318         
                                                                                                                                         115|                                         166|                                                                                                                                                       
                                                                                                                                          122                                          176
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5DW7)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5DW7)

(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (4, 4)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CYC2_STRCO | Q9X839: 5dz2

(-) Related Entries Specified in the PDB File

5dz2 STREPTOMYCES COELICOLOR GEOSMIN SYNTHASE N-TERMINAL DOMAIN COMPLEXED WITH THREE MG2+ IONS AND ALENDRONIC ACID