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(-) Description

Title :  THE CRYSTAL STRUCTURE OF THE C-TERMINAL DOMAIN OF EBOLA (BUNDIBUGYO) NUCLEOPROTEIN
 
Authors :  L. Baker, K. B. Handing, D. Utepbergenov, U. Derewenda, Z. S. Derewenda
Date :  17 Sep 15  (Deposition) - 30 Sep 15  (Release) - 02 Mar 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.31
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  A  (2x)
Biol. Unit 3:  A  (2x)
Keywords :  Viral Protein, Filoviridae (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. E. Baker, J. F. Ellena, K. B. Handing, U. Derewenda, D. Utepbergenov D. A. Engel, Z. S. Derewenda
Molecular Architecture Of The Nucleoprotein C-Terminal Domain From The Ebola And Marburg Viruses.
Acta Crystallogr D Struct V. 72 49 2016 Biol
PubMed-ID: 26894534  |  Reference-DOI: 10.1107/S2059798315021439
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - NUCLEOPROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PARALLEL1-MBPHIS
    Expression System Strain: BL21 (DE3) RIL
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: C-TERMINAL DOMAIN (UNP RESIDUES 641-739)
    Gene: NP, DH33_45404GPNP
    Organism Scientific: BUNDIBUGYO VIRUS
    Organism Taxid: 565995

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (1x): A
Biological Unit 2 (2x): A
Biological Unit 3 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 3)

Asymmetric Unit (2, 3)
No.NameCountTypeFull Name
1CL1Ligand/IonCHLORIDE ION
2GOL2Ligand/IonGLYCEROL
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2GOL2Ligand/IonGLYCEROL
Biological Unit 2 (1, 4)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2GOL4Ligand/IonGLYCEROL
Biological Unit 3 (1, 4)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2GOL4Ligand/IonGLYCEROL

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELYS A:703 , ASN A:707binding site for residue GOL A 801
2AC2SOFTWAREASN A:726 , ARG A:728 , HOH A:927 , HOH A:936 , HOH A:1009binding site for residue GOL A 802
3AC3SOFTWARESER A:679binding site for residue CL A 803

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5DSD)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Tyr A:688 -Pro A:689

 Sequence-Structure Mapping

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(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:103
                                                                                                                                       
               SCOP domains ------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeee.....eeeehhhhh.........hhhhhhhh.eee....eee.hhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------- Transcript
                 5dsd A 637 GAMANAQSEQSIAEMYQHILKTQGPFDAILYYHMMKEEPIIFSTSDGKEYTYPDSLEDEYPPWLSEKEAMNEDNRFITMDGQQFYWPVMNHRNKFMAILQHHR 739
                                   646       656       666       676       686       696       706       716       726       736
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 Classification and Annotation

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(-) Gene Ontology  (2, 2)

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(-) Related Entries Specified in the PDB File

4qaz THE CRYSTAL STRUCTURE OF THE C-TERMINAL DOMAIN OF EBOLA (ZAIRE) NUCLEOPROTEIN
4qb0 THE CRYSTAL STRUCTURE OF THE C-TERMINAL DOMAIN OF EBOLA (ZAIRE) NUCLEOPROTEIN