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(-) Description

Title :  S. AUREUS MAZF IN COMPLEX WITH SUBSTRATE ANALOGUE
 
Authors :  V. Zorzini, R. Loris
Date :  07 Sep 15  (Deposition) - 28 Sep 16  (Release) - 28 Sep 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.40
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Toxin-Antitoxin, Mrna Interferase, Ribonuclease, Persistence, Bacterial Stress Response, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  V. Zorzini, R. Loris
Substrate Recognition, Regulation Mechanism And Activity Regulation Of Mazf Mrna Interferase.
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - ENDORIBONUCLEASE MAZF
    Chains: A
    EC Number: 3.1.-.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: MAZF, SAHV_2053
    Organism Scientific: STAPHYLOCOCCUS AUREUS
    Organism Taxid: 1280
    Synonym: TOXIN MAZF,MRNA INTERFERASE MAZF
 
Molecule 2 - DNA SUBSTRATE ANALOGUE AUACAUA
    Chains: B
    Engineered: YES
    Organism Scientific: ENTEROBACTERIO PHAGE MS2
    Organism Taxid: 12022
    Synthetic: YES

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 3)

Asymmetric/Biological Unit (2, 3)
No.NameCountTypeFull Name
1CL1Ligand/IonCHLORIDE ION
2DU2Mod. Residue

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:17binding site for residue CL A 201

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5DLO)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Ser A:13 -Pro A:14

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5DLO)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5DLO)

(-) Exons   (0, 0)

(no "Exon" information available for 5DLO)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:115
                                                                                                                                                   
               SCOP domains ------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeeee...........eeeeee..hhhhhhhh.eeeeeeee..........eeee..........eeeeeeeeeeee...eeeeeee.hhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------- Transcript
                 5dlo A   0 DPIRRGDVYLADLSPVQGSEQGGVRPVVIIQNDTGNKYSPTVIVAAITGRINKAKIPTHVEIEKKKYKLDKDSVILLEQIRTLDKKRLKEKLTYLSDDKMKEVDNALMISLGLNA 114
                                     9        19        29        39        49        59        69        79        89        99       109     


Chain B from PDB  Type:DNA  Length:7
                                       
                 5dlo B   2 AxACAxA   8
                             |   | 
                             3-DU| 
                                 7-DU
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5DLO)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5DLO)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5DLO)

(-) Gene Ontology  (6, 12)

Asymmetric/Biological Unit(hide GO term definitions)

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  MAZF_STAA1 | A7X4P5
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 Related Entries

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