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(-) Description

Title :  CRYSTAL STRUCTURE OF SERRALYSIN
 
Authors :  D. X. Wu, T. T. Ran, D. Q. Xu, W. W. Wang
Date :  14 Aug 15  (Deposition) - 13 Jan 16  (Release) - 13 Jan 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.10
Chains :  Asym./Biol. Unit :  A
Keywords :  Protease, Metalloprotease, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. X. Wu, T. T. Ran, W. W. Wang, D. Q. Xu
Structure Of A Thermostable Serralysin From Serratia Sp. Fs14 At 1. 1 Angstrom Resolution
Acta Crystallogr. , Sect. F V. 72 10 2016
PubMed: search  |  Reference-DOI: 10.1107/S2053230X15023092

(-) Compounds

Molecule 1 - SERRALYSIN
    Chains: A
    EC Number: 3.4.24.40
    Engineered: YES
    Expression System: SERRATIA
    Expression System Taxid: 613
    Fragment: UNP RESIDUES 20-487
    Mutation: YES
    Organism Scientific: SERRATIA MARCESCENS
    Organism Taxid: 615
    Synonym: EXTRACELLULAR METALLOPROTEINASE,ZINC PROTEINASE

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 10)

Asymmetric/Biological Unit (3, 10)
No.NameCountTypeFull Name
1CA7Ligand/IonCALCIUM ION
2GOL2Ligand/IonGLYCEROL
3ZN1Ligand/IonZINC ION

(-) Sites  (10, 10)

Asymmetric Unit (10, 10)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHIS A:176 , HIS A:180 , HIS A:186 , TYR A:216 , HOH A:648binding site for residue ZN A 501
02AC2SOFTWAREARG A:253 , GLY A:255 , THR A:257 , ASP A:285 , GLY A:287 , ASP A:290binding site for residue CA A 502
03AC3SOFTWAREGLY A:288 , ASP A:290 , THR A:327 , GLU A:329 , HOH A:839 , HOH A:1004binding site for residue CA A 503
04AC4SOFTWAREGLY A:334 , GLY A:336 , ASP A:338 , GLY A:351 , ALA A:353 , ASP A:356binding site for residue CA A 504
05AC5SOFTWAREASN A:343 , ALA A:345 , ASN A:347 , GLY A:360 , GLY A:362 , ASP A:365binding site for residue CA A 505
06AC6SOFTWAREGLY A:352 , GLY A:354 , ASP A:356 , GLY A:369 , ALA A:371 , ASP A:374binding site for residue CA A 506
07AC7SOFTWAREGLY A:370 , GLY A:372 , ASP A:374 , ASP A:400 , HOH A:830 , HOH A:947binding site for residue CA A 507
08AC8SOFTWAREGLY A:361 , GLY A:362 , GLY A:363 , ASP A:365 , ASP A:383 , ASP A:390 , HOH A:607binding site for residue CA A 508
09AC9SOFTWAREASP A:168 , HIS A:229 , TYR A:230 , ALA A:231 , ALA A:232 , LYS A:278 , ILE A:280 , HOH A:609 , HOH A:640 , HOH A:782binding site for residue GOL A 509
10AD1SOFTWARETHR A:4 , ASP A:7 , TYR A:130 , ASN A:157 , SER A:405 , LYS A:409 , HOH A:605 , HOH A:638 , HOH A:664binding site for residue GOL A 510

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5D7W)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5D7W)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5D7W)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5D7W)

(-) Exons   (0, 0)

(no "Exon" information available for 5D7W)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:469
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhh........ee..ee..hhhhhhhhhh...............eeeeee....................hhhhhhhhhhhhhhhhhhh.eeeee........eeeeee.eee..ee.....eee.....ee..ee...eeeee..hhhhhh...hhhhhhhhhhhhhhhhh......hhhhh...hhhhh...............hhhhhh...........hhhhhhhhhhhhh..........eee......hhhhh.........eee.......eee........eee.....ee........eee.......eee......eee......eee......eee......eee......eee..hhhhhh.....ee........eeehhhhhhhhh.....ee.........eeeeeee....eeeeee.........eeeeee........ee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5d7w A   3 ATGYDAVDDLLHYHERGNGIQINGKDSFSNEQAGLFITRENQTWNGYKVFGQPVKLTFSFPDYKFSSTNVAGDTGLSKFSAEQQQQAKLSLQSWADVANITFTEVAAGQKANITFGNYSQDRPGHYDYGTQAYAFLPNTIWQGQDLGGQTWYNVNQSNVKHPATEDYGRQTFTHEIGHALGLSHPGDYNAGEGNPTYNDVTYAEDTRQFSLMSYWSETNTGGDNGGHYAAAPLLDDIAAIQHLYGANLSTRTGDTVYGFNSNTGRDFLSTTSNSQKVIFAAWDAGGNDTFDFSGYTANQRINLNEKSFSDVGGLKGNVSIAAGVTIENAIGGSGNDVIVGNAANNVLKGGAGNDVLFGGGGADELWGGAGKDIFVFSAASDSAPGASDWIRDFQKGIDKIDLSFFNKEANSSDFIHFVDHFSGTAGEALLSYNASSNVTDLSVNIGGHQAPDFLVKIVGQVDVATDFIV 471
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5D7W)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5D7W)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5D7W)

(-) Gene Ontology  (12, 12)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        PRZN_SERMA | P23694: 1af0 1sat 1smp 4i35

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