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(-) Description

Title :  STRUCTURE OF CHAETOMIUM THERMOPHILUM SKN7 COILED-COIL DOMAIN, CRYSTAL FORM II
 
Authors :  T. Neudegger, J. Verghese, M. Hayer-Hartl, A. Bracher, F. U. Hartl
Date :  11 Aug 15  (Deposition) - 30 Dec 15  (Release) - 10 Feb 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.70
Chains :  Asym. Unit :  A,B,C,D,E
Biol. Unit 1:  A,B,C  (1x)
Biol. Unit 2:  D,E  (2x)
Keywords :  Coiled-Coil, Transcription (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. Neudegger, J. Verghese, M. Hayer-Hartl, F. U. Hartl, A. Bracher
Structure Of Human Heat-Shock Transcription Factor 1 In Complex With Dna.
Nat. Struct. Mol. Biol. V. 23 140 2016
PubMed-ID: 26727489  |  Reference-DOI: 10.1038/NSMB.3149

(-) Compounds

Molecule 1 - PUTATIVE TRANSCRIPTION FACTOR
    Chains: A, B, C, D, E
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PHUE
    Expression System Taxid: 469008
    Expression System Variant: ROSETTA 2
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 160-209
    Gene: CTHT_0048700
    Organism Scientific: CHAETOMIUM THERMOPHILUM
    Organism Taxid: 209285
    Synonym: CTSKN7

 Structural Features

(-) Chains, Units

  12345
Asymmetric Unit : ABCDE
Biological Unit 1 (1x): ABC  
Biological Unit 2 (2x):    DE

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5D5Z)

(-) Sites  (0, 0)

(no "Site" information available for 5D5Z)

(-) SS Bonds  (1, 1)

Asymmetric Unit
No.Residues
1D:185 -E:185

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5D5Z)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5D5Z)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5D5Z)

(-) Exons   (0, 0)

(no "Exon" information available for 5D5Z)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:50
                                                                                  
               SCOP domains -------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------- Transcript
                 5d5z A 160 SQQQIAALSESLQATQQQLQALQQQCYELEKTNRLLVSEVMTLQKMVKAQ 209
                                   169       179       189       199       209


Chain B from PDB  Type:PROTEIN  Length:50
                                                                                  
               SCOP domains -------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------- Transcript
                 5d5z B 160 SQQQIAALSESLQATQQQLQALQQQCYELEKTNRLLVSEVMTLQKMVKAQ 209
                                   169       179       189       199       209


Chain C from PDB  Type:PROTEIN  Length:50
                                                                                  
               SCOP domains -------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------- Transcript
                 5d5z C 160 SQQQIAALSESLQATQQQLQALQQQCYELEKTNRLLVSEVMTLQKMVKAQ 209
                                   169       179       189       199       209


Chain D from PDB  Type:PROTEIN  Length:50
                                                                                  
               SCOP domains -------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------- Transcript
                 5d5z D 160 SQQQIAALSESLQATQQQLQALQQQCYELEKTNRLLVSEVMTLQKMVKAQ 209
                                   169       179       189       199       209


Chain E from PDB  Type:PROTEIN  Length:49
                                                                                 
               SCOP domains ------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------- Transcript
                 5d5z E 160 SQQQIAALSESLQATQQQLQALQQQCYELEKTNRLLVSEVMTLQKMVKA 208
                                   169       179       189       199
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5D5Z)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5D5Z)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5D5Z)

(-) Gene Ontology  (6, 6)

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 Related Entries

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UniProtKB/TrEMBL
        G0SB31_CHATD | G0SB31: 5d5w 5d5x 5d5y 5d60

(-) Related Entries Specified in the PDB File

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