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(-) Description

Title :  CRYSTAL STRUCTURE OF TPPHA VARIANT - H39A
 
Authors :  J. Su
Date :  06 Aug 15  (Deposition) - 04 May 16  (Release) - 04 May 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym./Biol. Unit :  A
Keywords :  Pp2C Type Phosphatase, Metal Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Si, Y. Yuan, Y. Wang, J. Gao, Y. Hu, S. Feng, J. Su
Structural And Biochemical Characterization Of A Cyanobacterial Pp2C Phosphatase Reveals Insights Into Catalytic Mechanism And Substrate Recognition
Catalysts 2016
PubMed: search  |  Reference-DOI: 10.3390/CATAL6050060

(-) Compounds

Molecule 1 - PROTEIN SERIN-THREONIN PHOSPHATASE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Gene: TLR2243
    Mutation: YES
    Organism Scientific: THERMOSYNECHOCOCCUS ELONGATUS (STRAIN BP-1)
    Organism Taxid: 197221
    Strain: BP-1

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

Asymmetric/Biological Unit (1, 4)
No.NameCountTypeFull Name
1CA4Ligand/IonCALCIUM ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:34 , ASP A:193 , ASP A:231 , CA A:302 , HOH A:411 , HOH A:429 , HOH A:441 , HOH A:480binding site for residue CA A 301
2AC2SOFTWAREASP A:34 , GLY A:35 , CA A:301 , HOH A:408 , HOH A:429 , HOH A:444 , HOH A:476 , HOH A:484binding site for residue CA A 302
3AC3SOFTWAREASP A:119 , ASP A:193 , HOH A:454 , HOH A:475binding site for residue CA A 303
4AC4SOFTWAREGLU A:198 , HIS A:227 , HOH A:443 , HOH A:449 , HOH A:453 , HOH A:461 , HOH A:501binding site for residue CA A 304

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5D2U)

(-) Cis Peptide Bonds  (8, 8)

Asymmetric/Biological Unit
No.Residues
1Ala A:39 -Ala A:40
2Ala A:40 -Gly A:41
3Gly A:41 -Gly A:42
4Leu A:146 -Gly A:147
5Gly A:147 -Ser A:148
6Glu A:152 -Gln A:153
7Arg A:155 -Gln A:156
8Trp A:159 -Arg A:160

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5D2U)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5D2U)

(-) Exons   (0, 0)

(no "Exon" information available for 5D2U)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:240
                                                                                                                                                                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeee.........eeeee......eeeeeeee.....hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh......ee.eeeeee.....eeeeeee...eeeeee..eeee.....hhhhhhhhhh............................eeeeee.....eeeeehhhhhh..hhhhhhhhh...hhhhhhhhhhhhhhhh.....eeeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5d2u A   1 MDVAGLTDCGLIRKSNQDAFYIDEKHQRFFIVADGMGGAAGGEEASRLAVDHIRQYLETHLEDLQHDPVTLLRQAFLAANHAIVEQQRQNSARADMGTTAVVILLDEKGDRAWCAHVGDSRIYRWRKDQLQQITSDHTWIAQAVQLGSLTIEQARQHPWRHVLSQCLGREDLSQIDIQPIDLEPGDRLLLCSDGLTEELTDDVISIYLSEPNVQKAAAALVDAAKTHGGRDNVTVVVISV 240
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5D2U)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5D2U)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5D2U)

(-) Gene Ontology  (5, 5)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Ala A:39 - Ala A:40   [ RasMol ]  
    Ala A:40 - Gly A:41   [ RasMol ]  
    Arg A:155 - Gln A:156   [ RasMol ]  
    Glu A:152 - Gln A:153   [ RasMol ]  
    Gly A:147 - Ser A:148   [ RasMol ]  
    Gly A:41 - Gly A:42   [ RasMol ]  
    Leu A:146 - Gly A:147   [ RasMol ]  
    Trp A:159 - Arg A:160   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        Q8DGS1_THEEB | Q8DGS1: 2j82 2j86 2xzv 2y09 5iti

(-) Related Entries Specified in the PDB File

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