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(-) Description

Title :  2009 H1N1 PA ENDONUCLEASE MUTANT F105S
 
Authors :  G. Kumar, S. W. White
Date :  05 Aug 15  (Deposition) - 16 Mar 16  (Release) - 13 Apr 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.15
Chains :  Asym./Biol. Unit :  A
Keywords :  Influenza, Resistance, Endonuclease Inhibitor, Viral Protein, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. S. Song, G. Kumar, W. R. Shadrick, W. Zhou, T. Jeevan, Z. Li, P. J. Slavish, T. P. Fabrizio, S. W. Yoon, T. R. Webb, R. J. Webby, S. W. White
Identification And Characterization Of Influenza Variants Resistant To A Viral Endonuclease Inhibitor.
Proc. Natl. Acad. Sci. Usa V. 113 3669 2016
PubMed-ID: 26976575  |  Reference-DOI: 10.1073/PNAS.1519772113

(-) Compounds

Molecule 1 - POLYMERASE ACIDIC PROTEIN
    Chains: A
    EC Number: 3.1.-.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET52B
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: ENDONUCLEASE DOMAIN (UNP RESIDUES 1-50, 73-196 CONNECTED BY GGS LINKER)
    Gene: PA
    Mutation: YES
    Organism Scientific: INFLUENZA A VIRUS
    Organism Taxid: 641501
    Strain: SWL A/CALIFORNIA/04/2009 H1N1
    Synonym: PA ENDONUCLEASE

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric/Biological Unit (1, 2)
No.NameCountTypeFull Name
1MN2Ligand/IonMANGANESE (II) ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:41 , ASP A:108 , GLU A:119 , ILE A:120 , MN A:302 , HOH A:457binding site for residue MN A 301
2AC2SOFTWAREGLU A:80 , ASP A:108 , MN A:301 , HOH A:403 , HOH A:413 , HOH A:439 , HOH A:457binding site for residue MN A 302

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5D2O)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5D2O)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5D2O)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5D2O)

(-) Exons   (0, 0)

(no "Exon" information available for 5D2O)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:178
                                                                                                                                                                                                                  
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhh.....eee....hhhhhhhhhhhhhhhhh.........eee....eeeeeeee..hhhhhhhhhhhhhh....eeeeee....eee.hhh...hhhhhhhhhhhhhhhhhhhhhh.hhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5d2o A   1 MEDFVRQCFNPMIVELAEKAMKEYGEDPKIETNKFAAICTHLEVCFMYSDGGSKHRFEIIEGRDRIMAWTVVNSICNTTGVEKPKSLPDLYDYKENRFIEIGVTRREVHIYYLEKANKIKSEKTHIHIFSFTGEEMATKADYTLDEESRARIKTRLFTIRQEMASRSLWDSFRQSERA 197
                                    10        20        30        40        50  ||    79        89        99       109       119       129       139       149       159       169       179       189        
                                                                               53|                                                                                                                            
                                                                                73
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5D2O)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5D2O)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5D2O)

(-) Gene Ontology  (5, 5)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/TrEMBL
        C3W5S0_I09A0 | C3W5S0: 4avg 4avl 4avq 4awf 4awg 4awh 4awk 4awm 5ccy 5cgv 5cl0 5czn 5d42 5d4g 5d8u 5d9j 5dbs 5deb 5des 5ega

(-) Related Entries Specified in the PDB File

5ccy 5cgv 5cl0 5czn 5d42