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(-) Description

Title :  CRYSTAL STRUCTURE OF MYCOBACTERIUM TUBERCULOSIS RV1816 TRANSCRIPTIONAL REGULATOR.
 
Authors :  T. -H. Chou, J. Delmar, C. -C. Su, E. Yu
Date :  04 Aug 15  (Deposition) - 30 Sep 15  (Release) - 02 Dec 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Mycobacterium Tuberculosis, Transcriptional Regulator, Transcription (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. A. Delmar, T. H. Chou, C. C. Wright, M. H. Licon, J. K. Doh, A. Radhakrishnan, N. Kumar, H. T. Lei, J. R. Bolla, K. R. Rajashankar, C. C. Su, G. E. Purdy, E. W. Yu
Structural Basis For The Regulation Of The Mmpl Transporter Of Mycobacterium Tuberculosis.
J. Biol. Chem. V. 290 28559 2015
PubMed-ID: 26396194  |  Reference-DOI: 10.1074/JBC.M115.683797

(-) Compounds

Molecule 1 - RV1816 TRANSCRIPTIONAL REGULATOR
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: MT1864
    Organism Scientific: MYCOBACTERIUM TUBERCULOSIS (STRAIN CDC 1551 / OSHKOSH)
    Organism Taxid: 83331
    Strain: CDC 1551 / OSHKOSH

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 8)

Asymmetric/Biological Unit (4, 8)
No.NameCountTypeFull Name
156S1Ligand/IonPROPAN-2-YL DODECANOATE
2MG2Ligand/IonMAGNESIUM ION
3NI2Ligand/IonNICKEL (II) ION
4SO43Ligand/IonSULFATE ION

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:236 , HIS A:238 , HIS B:234 , HIS B:239 , HOH B:449binding site for residue NI A 301
2AC2SOFTWAREHIS A:235 , HIS A:237 , HIS B:238 , HOH B:444 , HOH B:476 , HOH B:486binding site for residue NI A 302
3AC3SOFTWAREHIS A:237 , HIS A:238 , HIS A:239 , HOH A:410 , HOH A:457binding site for residue SO4 A 303
4AC4SOFTWAREASN A:109 , PRO A:110 , ALA A:111 , ARG A:112 , HOH A:475 , HOH A:506binding site for residue MG A 304
5AC5SOFTWARETHR A:136 , VAL A:139 , PHE A:142 , CYS A:189 , PHE A:190 , TYR B:208 , ALA B:210binding site for residue 56S A 305
6AC6SOFTWARELEU A:226 , ARG B:184 , LYS B:188 , GLU B:233 , HIS B:234 , HIS B:235 , HIS B:236 , HOH B:412 , HOH B:426binding site for residue SO4 B 301
7AC7SOFTWAREHIS B:235 , HIS B:236 , HIS B:237binding site for residue SO4 B 302
8AC8SOFTWARELEU B:30 , ASN B:109 , ALA B:111 , ARG B:112binding site for residue MG B 303

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5D1R)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Gln A:164 -Pro A:165
2Gln B:164 -Pro B:165

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5D1R)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5D1R)

(-) Exons   (0, 0)

(no "Exon" information available for 5D1R)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:227
                                                                                                                                                                                                                                                                   
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhh....hhhhhhhhh..hhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5d1r A  13 AREQIEAKIVELGRRQLLDHGAAGLSLRAIARNLGMVSSAVYRYVSSRDELLTLLLVDAYSDLADTVDRARDDTVADSWSDDVIAIARAVRGWAVTNPARWALLYGSPVPGYHAPPDRTAGVATRVVGAFFDAIAAGIATGDIRLTDDVAPQPMSSDFEKIRQEFGFPGDDRVVTKCFLLWAGVVGAISLEVFGQYGADMLTDPGVVFDAQTRLLVAVLAEHHHHHH 239
                                    22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       


Chain B from PDB  Type:PROTEIN  Length:226
                                                                                                                                                                                                                                                                  
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhhhhhhhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5d1r B  14 REQIEAKIVELGRRQLLDHGAAGLSLRAIARNLGMVSSAVYRYVSSRDELLTLLLVDAYSDLADTVDRARDDTVADSWSDDVIAIARAVRGWAVTNPARWALLYGSPVPGYHAPPDRTAGVATRVVGAFFDAIAAGIATGDIRLTDDVAPQPMSSDFEKIRQEFGFPGDDRVVTKCFLLWAGVVGAISLEVFGQYGADMLTDPGVVFDAQTRLLVAVLAEHHHHHH 239
                                    23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5D1R)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5D1R)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5D1R)

(-) Gene Ontology  (6, 11)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

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(-) Related Entries Specified in the PDB File

5d1w