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(-) Description

Title :  WDR48 (UAF-1), RESIDUES 2-580
 
Authors :  S. F. Harris, J. Yin
Date :  27 Jul 15  (Deposition) - 07 Oct 15  (Release) - 11 Nov 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.00
Chains :  Asym./Biol. Unit :  A
Keywords :  Wdr48, Uaf1, Wd-Repeat, Usp, Deubiquitinase, Dub, Protein Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Yin, A. J. Schoeffler, K. Wickliffe, K. Newton, M. A. Starovasnik, E. C. Dueber, S. F. Harris
Structural Insights Into Wd-Repeat 48 Activation Of Ubiquitin-Specific Protease 46.
Structure V. 23 2043 2015
PubMed-ID: 26388029  |  Reference-DOI: 10.1016/J.STR.2015.08.010

(-) Compounds

Molecule 1 - WD REPEAT-CONTAINING PROTEIN 48
    Chains: A
    Engineered: YES
    Expression System: TRICHOPLUSIA NI
    Expression System Common: CABBAGE LOOPER
    Expression System Taxid: 7111
    Expression System Vector Type: BACULOVIRUS
    Fragment: UNP RESIDUES 2-580
    Gene: WDR48, KIAA1449, UAF1
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: USP1-ASSOCIATED FACTOR 1,WD REPEAT ENDOSOMAL PROTEIN,P80

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 9)

Asymmetric/Biological Unit (2, 9)
No.NameCountTypeFull Name
1AU7Ligand/IonGOLD ION
2PO42Ligand/IonPHOSPHATE ION

(-) Sites  (9, 9)

Asymmetric Unit (9, 9)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELYS A:168 , ARG A:193 , LYS A:202 , LYS A:205 , HOH A:716 , HOH A:739binding site for residue PO4 A 601
2AC2SOFTWAREARG A:274 , LYS A:294 , LYS A:318 , HOH A:708 , HOH A:717binding site for residue PO4 A 602
3AC3SOFTWARETYR A:268 , CYS A:278 , AU A:609binding site for residue AU A 603
4AC4SOFTWARECYS A:85 , GLU A:130 , ASN A:147binding site for residue AU A 604
5AC5SOFTWARECYS A:366 , LEU A:424 , AU A:608binding site for residue AU A 605
6AC6SOFTWARECYS A:109 , SER A:111 , THR A:112 , MET A:540binding site for residue AU A 606
7AC7SOFTWAREARG A:235 , CYS A:244 , THR A:247binding site for residue AU A 607
8AC8SOFTWARECYS A:366 , AU A:605 , HOH A:796binding site for residue AU A 608
9AC9SOFTWAREHIS A:266 , CYS A:278 , AU A:603binding site for residue AU A 609

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5CVL)

(-) Cis Peptide Bonds  (3, 3)

Asymmetric/Biological Unit
No.Residues
1Asp A:307 -Pro A:308
2Pro A:453 -Asp A:454
3Asn A:480 -Pro A:481

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5CVL)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5CVL)

(-) Exons   (0, 0)

(no "Exon" information available for 5CVL)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:526
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeee...........eeeeeee....eeeeee....eeeee........eeeee......eeeeeee....eeeeee....eeeee....eeeeee......eeeeeee....eeeeee....eeeeehhhhhh..........eee......eeeeee......eeeee....eeee......eeeee......eeeeee.....eeeeee...eeeeee....eeeeeee.....eeeeee.....eeeeee...eeeeee......eeeeee....eeeeee........eeeeee....eeeee..hhhhhhhh...........eee.....eeeeee.....eeeeee....eeeee....eeeeeee..hhhhhhhhh..........eee.....eeeee........eee..............eeehhhhhhhhhh..hhhhh.................eeeeee....eeeeee.hhhhhhhhhhhhhhhhhhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5cvl A  12 RRKVQVSYVIRDEVEKYNRNGVNALQLDPALNRLFTAGRDSIIRIWSVNQHKQDPYIASMEHHTDWVNDIVLCCNGKTLISASSDTTVKVWNAHKGFCMSTLRTHKDYVKALAYAKDKELVASAGLDRQIFLWDVNTLTALTASNNTVTTSSLSGNKDSIYSLAMNQLGTIIVSGSTEKVLRVWDPRTCAKLMKLKGHTDNVKALLLNRDGTQCLSGSSDGTIRLWSLGQQRCIATYRVHDEGVWALQVNDAFTHVYSGGRDRKIYCTDLRNPDIRVLICEEKAPVLKMELDRSADPPPAIWVATTKSTVNKWTLKGIHNFRASGPITPLCTQPDQVIKGGASIIQCHILNDKRHILTKDTNNNVAYWDVLKACKVEDLGKVDFEDEIKKRFKMVYVPNWFSVDLKTGMLTITLDESDCFAAWVSAKDAGFSSPDGSDPKLNLGGLLLQALLEYWPRTHVNPMDKGNGYFQVPPHTPVIFGEAGGRTLFRLLCRDSGGETESMLLNETVPQWVIDITVDKNMPKFN 563
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331    || 349       359       369       379       389       399       409       419       429       439       449       459       469       479   ||  507       517       527       537       547       557      
                                                                                                                                                                                                                                                                                                                                                              336|                                                                                                                                       483|                                                             
                                                                                                                                                                                                                                                                                                                                                               345                                                                                                                                        502
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5CVL)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5CVL)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5CVL)

(-) Gene Ontology  (21, 21)

Asymmetric/Biological Unit(hide GO term definitions)

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    Asn A:480 - Pro A:481   [ RasMol ]  
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    Pro A:453 - Asp A:454   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        WDR48_HUMAN | Q8TAF3: 5cvn 5cvo 5k1a 5k1b 5k1c 5l8e 5l8w

(-) Related Entries Specified in the PDB File

5cvm 5cvn 5cvo