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(-) Description

Title :  CRYSTAL STRUCTURE OF THE TYPE IX COLLAGEN NC2 HETERO-TRIMERIZATION DOMAIN WITH A GUEST FRAGMENT A2A1A1 OF TYPE I COLLAGEN
 
Authors :  S. P. Boudko, H. P. Bachinger
Date :  23 Jul 15  (Deposition) - 03 Aug 16  (Release) - 12 Jul 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.60
Chains :  Asym./Biol. Unit :  A,B,C
Keywords :  Collagen, Hetero-Trimerization, Chain Stagger, Chain Register, Triple Helix, Structural Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. P. Boudko, H. P. Bachinger
Structural Insight For Chain Selection And Stagger Control In Collagen.
Sci Rep V. 6 37831 2016
PubMed-ID: 27897211  |  Reference-DOI: 10.1038/SREP37831

(-) Compounds

Molecule 1 - COLLAGEN ALPHA-1(I) CHAIN,COLLAGEN ALPHA-1(IX) CHAIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET22B(+)
    Expression System Strain: B834(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 572-583, UNP RESIDUES 754-789
    Gene: COL1A1, COL9A1
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: ALPHA-1 TYPE I COLLAGEN
 
Molecule 2 - COLLAGEN ALPHA-2(I) CHAIN,COLLAGEN ALPHA-2(IX) CHAIN
    Chains: B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET22B(+)
    Expression System Strain: B834(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 484-495, UNP RESIDUES 517-552
    Gene: COL1A2, COL9A2
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: ALPHA-2 TYPE I COLLAGEN
 
Molecule 3 - COLLAGEN ALPHA-1(I) CHAIN,COLLAGEN ALPHA-3(IX) CHAIN
    Chains: C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET22B(+)
    Expression System Strain: B834(DE3)
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: UNP RESIDUES 572-583, UNP RESIDUES 517-553
    Gene: COL1A1, COL9A3
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: ALPHA-1 TYPE I COLLAGEN

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit : ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 3)

Asymmetric/Biological Unit (1, 3)
No.NameCountTypeFull Name
1MSE3Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 5CTD)

(-) SS Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1A:48 -C:48

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5CTD)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5CTD)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5CTD)

(-) Exons   (0, 0)

(no "Exon" information available for 5CTD)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:64
                                                                                               
               SCOP domains ---------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------- Pfam domains
         Sec.struct. author .......................................hhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------- Transcript
                  5ctd A  1 GSGPPGPPGPPGPPGARGQAGVmGFPGPPGPPGPPGRAPTDQHIKQVCmRVIQEHFAEmAASLK 64
                                    10        20  |     30        40        50        60    
                                                 23-MSE                    49-MSE    59-MSE 


Chain B from PDB  Type:PROTEIN  Length:71
                                                                                                      
               SCOP domains ----------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........................................hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------- Transcript
                  5ctd B  1 GSGPPGPPGPPGPPGARGEPGNIGFPGPPGPPGPPGRDATDQHIVDVALKMLQEQLAEVAVSAKREALGAV 71
                                    10        20        30        40        50        60        70 


Chain C from PDB  Type:PROTEIN  Length:72
                                                                                                       
               SCOP domains ------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .......................................hhhhhhhhhhhhhhhhhhhhhhhh......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------ Transcript
                  5ctd C  1 GSGPPGPPGPPGPPGARGQAGVMGFPGPPGPPGPPGKEASEQRIRELCGGMISEQIAQLAAHLRKPLAPGSI 72
                                    10        20        30        40        50        60        70
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5CTD)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5CTD)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5CTD)

(-) Gene Ontology  (84, 129)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        CO1A1_HUMAN | P02452: 1q7d 2llp 3ejh 3gxe 5cti 5cva 5cvb 5k31
        CO1A2_HUMAN | P08123: 5cti 5cva
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        CO9A2_HUMAN | Q14055: 5cti 5cva 5cvb
        CO9A3_HUMAN | Q14050: 5cti 5cva 5cvb

(-) Related Entries Specified in the PDB File

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