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(-) Description

Title :  C. REMANEI PGL-1 DIMERIZATION DOMAIN
 
Authors :  S. T. Aoki, C. A. Bingman, M. Wickens, J. E. Kimble
Date :  20 Jul 15  (Deposition) - 03 Feb 16  (Release) - 10 Feb 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.60
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Biol. Unit 2:  A  (2x)
Keywords :  Guanosine Endonuclease, Dimer, P-Granule, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. T. Aoki, A. M. Kershner, C. A. Bingman, M. Wickens, J. Kimble
Pgl Germ Granule Assembly Protein Is A Base-Specific, Single-Stranded Rnase.
Proc. Natl. Acad. Sci. Usa V. 113 1279 2016
PubMed-ID: 26787882  |  Reference-DOI: 10.1073/PNAS.1524400113

(-) Compounds

Molecule 1 - PUTATIVE UNCHARACTERIZED PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET21A
    Expression System Strain: ROSETTA-2
    Expression System Taxid: 469008
    Fragment: UNP RESIDUES 203-464
    Gene: CRE_08178
    Mutation: YES
    Organism Scientific: CAENORHABDITIS REMANEI
    Organism Taxid: 31234

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A
Biological Unit 2 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

Asymmetric Unit (2, 4)
No.NameCountTypeFull Name
1EDO2Ligand/Ion1,2-ETHANEDIOL
2SO42Ligand/IonSULFATE ION
Biological Unit 1 (2, 8)
No.NameCountTypeFull Name
1EDO4Ligand/Ion1,2-ETHANEDIOL
2SO44Ligand/IonSULFATE ION
Biological Unit 2 (2, 8)
No.NameCountTypeFull Name
1EDO4Ligand/Ion1,2-ETHANEDIOL
2SO44Ligand/IonSULFATE ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:274 , HIS A:387 , HOH A:617 , HOH A:644 , HOH A:707 , HOH A:753binding site for residue SO4 A 501
2AC2SOFTWAREARG A:289 , ARG A:292 , ARG A:301binding site for residue SO4 A 502
3AC3SOFTWAREGLU A:413 , THR A:414 , GLU A:415 , THR A:416 , ASN A:417 , ARG A:456binding site for residue EDO A 503
4AC4SOFTWAREGLN A:263 , PHE A:377 , ASP A:378 , HOH A:602 , HOH A:610binding site for residue EDO A 504

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5COW)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Lys A:338 -Pro A:339

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5COW)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5COW)

(-) Exons   (0, 0)

(no "Exon" information available for 5COW)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:234
                                                                                                                                                                                                                                                                          
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhh..hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhh.hhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhhhhhhhhhhhhhhh...............hhhhhhhhhhhhhhhhhhhhhh.....hhhhhhh....hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5cow A 216 DKFTYLLLQPLTEATLSDAVNFIVEKYSAELPDEGDASLVVRSQLGCQFFFLVTRTLAHDQRELAKLVQTLIPRPVRLEVFPGLQRSVFKSSVFLGHHIIQIFMGAKKPFQDWSFVGLAQDFECPWRRLAIAELLKKFSVSVVEKVFDNPVALIPQHESDNEALIELVTNALRFALWIVEFYETETNEKSIKELAFLDHSSKTLLIESFTKFLQGKDVKDQDHLKRIIDALEKS 464
                                   225       235       245       255       265       275       285       295       305       315    || 340       350       360       370       380       390       400       410       420       430       440       450       460    
                                                                                                                                  320|                                                                                                                                
                                                                                                                                   336
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5COW)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5COW)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5COW)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 5COW)

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(-) Related Entries Specified in the PDB File

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