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(-) Description

Title :  THE CRYSTAL STRUCTURE OF PHOSPHORIBOSYLGLYCINAMIDE FORMYLTRANSFERASE FROM CAMPYLOBACTER JEJUNI SUBSP. JEJUNI NCTC 11168
 
Authors :  K. Tan, M. Zhou, K. Kwon, W. F. Anderson, A. Joachimiak, Center For Str Genomics Of Infectious Diseases (Csgid)
Date :  14 Jul 15  (Deposition) - 29 Jul 15  (Release) - 29 Jul 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.42
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Structural Genomics, The Center For Structural Genomics Of Infectious Diseases, Csgid, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Tan, M. Zhou, K. Kwon, W. F. Anderson, A. Joachimiak
The Crystal Structure Of Phosphoribosylglycinamide Formyltransferase From Campylobacter Jejuni Subsp. Jejuni Nctc 11168
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PHOSPHORIBOSYLGLYCINAMIDE FORMYLTRANSFERASE
    Chains: A, B
    EC Number: 2.1.2.2
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG7
    Expression System Strain: BL21(DE3)-MAGIC
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: PURN, CJ0187C
    Organism Taxid: 192222
    Strain: NCTC 11168
    Synonym: 5'-PHOSPHORIBOSYLGLYCINAMIDE TRANSFORMYLASE,GAR TRANSFORMYLASE

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 13)

Asymmetric/Biological Unit (5, 13)
No.NameCountTypeFull Name
1CL1Ligand/IonCHLORIDE ION
2GOL1Ligand/IonGLYCEROL
3MSE8Mod. Amino AcidSELENOMETHIONINE
4PEG1Ligand/IonDI(HYDROXYETHYL)ETHER
5SO42Ligand/IonSULFATE ION

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREILE A:80 , ALA A:85 , ASN A:86 , LEU A:87 , THR A:88 , ASN A:104 , ILE A:105 , LYS A:106binding site for residue GOL A 201
2AC2SOFTWARELYS A:103 , ILE A:105 , LYS A:106 , TRP A:141binding site for residue PEG A 202
3AC3SOFTWAREASN A:109 , LEU A:110 , HIS A:111binding site for residue CL A 203
4AC4SOFTWAREASN B:12 , GLY B:13 , SER B:14 , ASN B:15 , HOH B:302 , HOH B:303 , HOH B:307binding site for residue SO4 B 201
5AC5SOFTWAREGLN B:78 , LYS B:81binding site for residue SO4 B 202

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5CJJ)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Leu A:115 -Pro A:116
2Leu B:115 -Pro B:116

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5CJJ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5CJJ)

(-) Exons   (0, 0)

(no "Exon" information available for 5CJJ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:187
                                                                                                                                                                                                                           
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeee....hhhhhhhhhhhh..ee..eeeeeeeee......hhhhhhhhhh.........hhhhhhhhhhhhhhh....eeee.......hhhhhh...eeeee..........hhhhhhhhh...eeeeeeee.........eeeeeeee....hhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5cjj A  -1 NAmLVKLAVLFSGNGSNLENILEKLHKKTIGENTYEIVLCLCNKKDAFGIQRAKKFGLNTVIKAYNTREEFDTILVQKIKESGANLTVLAGFmRILSPVFTKNIKAINLHPSLLPLFKGAHAIKESYESDmKVAGVSVHWVSEELDGGmIIAQKAFEKRNLSFEEFEEKIHSLEHEILPLSVIEIFS 188
                              |      8        18        28        38        48        58 ||     71        81        91  |    101       111       121       131|      141       151       161       171       181       
                              |                                                         60|                            94-MSE                               132-MSE           150-MSE                                  
                              1-MSE                                                      64                                                                                                                            


Chain B from PDB  Type:PROTEIN  Length:190
                                                                                                                                                                                                                              
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeee...hhhhhhhhhhh..eee..eeeeeeeeee.....hhhhhhhhh...eee.hhhhh.hhhhhhhhhhhhhhh....eeee.......hhhhhh...eeeee..........hhhhhhhhh...eeeeeeee.........eeeeeeee....hhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5cjj B  -1 NAmLVKLAVLFSGNGSNLENILEKLHKKTIGENTYEIVLCLCNKKDAFGIQRAKKFGLNTVIIDHKAYNTREEFDTILVQKIKESGANLTVLAGFmRILSPVFTKNIKAINLHPSLLPLFKGAHAIKESYESDmKVAGVSVHWVSEELDGGmIIAQKAFEKRNLSFEEFEEKIHSLEHEILPLSVIEIFS 188
                              |      8        18        28        38        48        58        68        78        88     |  98       108       118       128   |   138       148 |     158       168       178       188
                              1-MSE                                                                                       94-MSE                               132-MSE           150-MSE
   Legend:   → Mismatch (orange background)
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    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5CJJ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5CJJ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5CJJ)

(-) Gene Ontology  (6, 6)

Asymmetric/Biological Unit(hide GO term definitions)

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