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(-) Description

Title :  HUMAN OSTEOCLAST ASSOCIATED RECEPTOR (OSCAR) IN COMPLEX WITH A COLLAGEN-LIKE PEPTIDE
 
Authors :  G. F. Gao, J. Qi, Y. Shi, J. Haywood
Date :  14 Jul 15  (Deposition) - 20 Jan 16  (Release) - 10 Feb 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.40
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Immunoglobulin-Like, Collagen, Immune System-Structural Protein Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Haywood, J. Qi, C. C. Chen, G. Lu, Y. Liu, J. Yan, Y. Shi, G. F. Gao
Structural Basis Of Collagen Recognition By Human Osteoclast-Associated Receptor And Design Of Osteoclastogenesis Inhibitors.
Proc. Natl. Acad. Sci. Usa V. 113 1038 2016
PubMed-ID: 26744311  |  Reference-DOI: 10.1073/PNAS.1522572113

(-) Compounds

Molecule 1 - OSTEOCLAST-ASSOCIATED IMMUNOGLOBULIN-LIKE RECEPTOR
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 31-215
    Gene: OSCAR
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: HOSCAR,POLYMERIC IMMUNOGLOBULIN RECEPTOR 3, POLY-IG RECEPTOR 3
 
Molecule 2 - COLLAGEN-LIKE PEPTIDE
    Chains: B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 18)

Asymmetric/Biological Unit (1, 18)
No.NameCountTypeFull Name
1HYP18Mod. Amino Acid4-HYDROXYPROLINE

(-) Sites  (0, 0)

(no "Site" information available for 5CJB)

(-) SS Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1A:57 -A:104
2A:154 -A:199

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Gln A:42 -Pro A:43
2Ala A:206 -Pro A:207

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5CJB)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5CJB)

(-) Exons   (0, 0)

(no "Exon" information available for 5CJB)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:179
                                                                                                                                                                                                                   
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeee...ee.....eeeeeeeeeeeeeeeee........eeeeeeeeeeeeee........eeeeeeee...............eeeee.......eeeee....eeeeee.....eeeeeee.......eeeee...eeeeeehhhhh.eeeeeeee..............eee Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5cjb A  35 PKPWLGAQPATVVTPGVNVTLRCRAPQPAWRFGLFKPGEIAPLLFRDVSSELAEFFLEEVTPAQGGIYRCCYRRPDWGPGVWSQPSDVLELLVTEELPRPSLVALPGANVSLRCAGRLRNMSFVLYREGVAAPLQYRHSAQPWADFTLLGARAPGTYSCYYHTPSAPYVLSQRSEVLVI 219
                                    44        54        64        74        84        94       104       114       124       134      |150       160       170       180       190       200       210         
                                                                                                                                    141|                                                                       
                                                                                                                                     148                                                                       


Chain B from PDB  Type:PROTEIN  Length:23
                                                       
               SCOP domains ----------------------- SCOP domains
               CATH domains ----------------------- CATH domains
               Pfam domains ----------------------- Pfam domains
         Sec.struct. author ....................... Sec.struct. author
                 SAPs(SNPs) ----------------------- SAPs(SNPs)
                    PROSITE ----------------------- PROSITE
                 Transcript ----------------------- Transcript
                 5cjb B   1 GPpGPpGPpGPpGPAGFpGPpGP  23
                              |  |  10 |     |20|  
                              3-HYP |  |     |  |  
                                 6-HYP |     |  |  
                                    9-HYP    |  |  
                                      12-HYP |  |  
                                            18-HYP 
                                               21-HYP


Chain C from PDB  Type:PROTEIN  Length:22
                                                      
               SCOP domains ---------------------- SCOP domains
               CATH domains ---------------------- CATH domains
               Pfam domains ---------------------- Pfam domains
         Sec.struct. author ...................... Sec.struct. author
                 SAPs(SNPs) ---------------------- SAPs(SNPs)
                    PROSITE ---------------------- PROSITE
                 Transcript ---------------------- Transcript
                 5cjb C   1 GPpGPpGPpGPpGPAGFpGPpG  22
                              |  |  10 |     |20| 
                              |  |  |  |     |  | 
                              3-HYP |  |     |  | 
                                 6-HYP |     |  | 
                                    9-HYP    |  | 
                                      12-HYP |  | 
                                            18-HYP
                                               21-HYP


Chain D from PDB  Type:PROTEIN  Length:23
                                                       
               SCOP domains ----------------------- SCOP domains
               CATH domains ----------------------- CATH domains
               Pfam domains ----------------------- Pfam domains
         Sec.struct. author ....................... Sec.struct. author
                 SAPs(SNPs) ----------------------- SAPs(SNPs)
                    PROSITE ----------------------- PROSITE
                 Transcript ----------------------- Transcript
                 5cjb D   1 GPpGPpGPpGPpGPAGFpGPpGP  23
                              |  |  10 |     |20|  
                              |  |  |  |     |  |  
                              3-HYP |  |     |  |  
                                 6-HYP |     |  |  
                                    9-HYP    |  |  
                                      12-HYP |  |  
                                            18-HYP 
                                               21-HYP
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5CJB)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5CJB)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5CJB)

(-) Gene Ontology  (6, 6)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Ala A:206 - Pro A:207   [ RasMol ]  
    Gln A:42 - Pro A:43   [ RasMol ]  
 

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  5cjb
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  OSCAR_HUMAN | Q8IYS5
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        OSCAR_HUMAN | Q8IYS5: 5cj8 5eiq 5eiv

(-) Related Entries Specified in the PDB File

5cj8 APO FORM OF OSCAR