5CIY - JenaLib

Molecule 1 - MODIFICATION METHYLASE HHAI
	Chains	:	A
	EC Number	:	2.1.1.37
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI K-12
	Expression System Plasmid	:	PUHE25HHAI
	Expression System Taxid	:	83333
	Expression System Variant	:	ER1727
	Expression System Vector Type	:	PLASMID
	Gene	:	HHAIM
	Organism Scientific	:	HAEMOPHILUS PARAHAEMOLYTICUS
	Organism Taxid	:	735
	Synonym	:	M.HHAI,CYTOSINE-SPECIFIC METHYLTRANSFERASE HHAI

*Molecule 2 - DNA (5'-D(PCPCPAPTPGPCPGPCPTPGPAPC)-3')*
	Chains	:	C
	Engineered	:	YES
	Organism Scientific	:	HAEMOPHILUS HAEMOLYTICUS
	Organism Taxid	:	726
	Synthetic	:	YES

*Molecule 3 - DNA (5'-D(PGPTPCPAPGP(3DR)PGPCPAPTPGPG)-3')*
	Chains	:	D
	Engineered	:	YES
	Organism Scientific	:	HAEMOPHILUS HAEMOLYTICUS
	Organism Taxid	:	726
	Synthetic	:	YES

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 10)

Sites (9, 9)

Asymmetric Unit (9, 9)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	PHE A:18 , ALA A:19 , GLY A:20 , LEU A:21 , GLY A:23 , ASN A:39 , GLU A:40 , TRP A:41 , ASP A:42 , ASP A:60 , ILE A:61 , GLY A:78 , PRO A:80 , TYR A:285 , ASN A:304 , SER A:305 , VAL A:306 , HOH A:574 , HOH A:621 , HOH A:650 , HOH A:665 , HOH A:754 , HOH A:783 , HOH A:838	binding site for residue SAH A 401
2	AC2	SOFTWARE	PRO A:198 , ASP A:199 , HOH A:513 , HOH A:553 , HOH A:636 , HOH A:685 , HOH A:686 , HOH A:776 , HOH A:780	binding site for residue SO4 A 402
3	AC3	SOFTWARE	LYS A:193 , ARG A:245 , LYS A:290 , HOH A:532 , HOH A:587 , HOH A:608 , HOH A:627 , HOH A:666 , HOH A:711 , HOH A:791	binding site for residue SO4 A 403
4	AC4	SOFTWARE	PRO A:286 , ASP A:287 , SER A:288 , HOH A:519 , HOH A:547 , HOH A:810	binding site for residue SO4 A 404
5	AC5	SOFTWARE	ILE A:219 , GLU A:220 , GLN A:221 , HOH A:520 , HOH A:746	binding site for residue SO4 A 405
6	AC6	SOFTWARE	LYS A:114 , ARG A:172 , HOH A:813	binding site for residue SO4 A 406
7	AC7	SOFTWARE	LEU A:196 , PRO A:198 , ARG A:281	binding site for residue SO4 A 407
8	AC8	SOFTWARE	ASN A:141 , SER A:146 , PHE A:147 , HOH A:515 , HOH A:573 , HOH A:580	binding site for residue SO4 A 408
9	AC9	SOFTWARE	TRP A:41 , HOH A:523 , HOH A:691	binding site for residue SO4 A 409

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:327
                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ............eeeee....hhhhhhhhhh..eeeeee..hhhhhhhhhhhhh.....hhhhhhhhhh....eeeee............hhhhhhhhhhhhhhhhhhhhhh..eeeeeee.hhhhhhhhhhhhhhhhhhhhh....eeeeee.hhh......eeeeeeee.hhhh..............hhhhh..hhhhhhh.ee.....ee.............eeee........eeee....................eeee..eee..hhhhhhhhh..........hhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ciy A   1 MIEIKDKQLTGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGEKPEGDITQVNEKTIPDHDILCAGFPCQAFSISGKQKGFEDSRGTLFFDIARIVREKKPKVVFMENVKNFASHDNGNTLEVVKNTMNELDYSFHAKVLNALDYGIPQKRERIYMICFRNDLNIQNFQFPKPFELNTFVKDLLLPDSEVEHLVIDRKDLVMTNQEIEQTTPKTVRLGIVGKGGQGERIYSTRGIAITLSAYGGGIFAKTGGYLVNGKTRKLHPRECARVMGYPDSYKVHPSTSQAYKQFGNSVVINVLQYIAYNIGSSLNFKPY 327
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320

Chain C from PDB  Type:DNA  Length:12
                                            
                 5ciy C 402 CCATGCGCTGAC 413
                                   411

Chain D from PDB  Type:DNA  Length:12
                                            
                 5ciy D 422 GTCAGxGCATGG 433
                                 | 431  
                               427-3DR

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (6, 6)

Visualization

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	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 5ciy)

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	5ciy
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	MTH1_HAEPH \| P05102
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	2.1.1.37
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Description

Compounds