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(-) Description

Title :  CRYSTAL STRUCTURE OF AN ABC TRANSPORTER SOLUTE BINDING PROTEIN FROM THERMOTOGA LETTINGAE TMO (TLET_1705, TARGET EFI-510544) BOUND WITH ALPHA-D-TAGATOSE
 
Authors :  U. Yadava, M. W. Vetting, N. F. Al Obaidi, R. Toro, L. L. Morisco, J. Bena J. Koss, S. R. Wasserman, J. D. Attonito, A. Scott Glenn, S. Chamala, S. Chowdhury, J. Lafleur, J. Love, R. D. Seidel, K. L. Whalen, J. A. Gerl S. C. Almo, Enzyme Function Initiative (Efi)
Date :  11 Jul 15  (Deposition) - 22 Jul 15  (Release) - 22 Jul 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.61
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Oxidoreductase, Enzyme Function Initiative, Efi, Structural Genomics, Sugar Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  U. Yadava, M. W. Vetting, N. F. Al Obaidi, R. Toro, L. L. Morisco, J. Benach, J. Koss, S. R. Wasserman, J. D. Attonito, A. Scott Glenn, S. Chamala, S. Chowdhury, J. Lafleur, J. Love, R. D. Seidel, K. L. Whalen, J. A. Gerlt, S. C. Almo, Enzyme Function Initiative (Efi)
Crystal Structure Of An Abc Transporter Solute Binding Protein From Thermotoga Lettingae Tmo (Tlet_1705, Target Efi-510544) Bound With Alpha-D-Tagatose
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - EXTRACELLULAR SOLUTE-BINDING PROTEIN FAMILY 1
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: PUTATIVE OXIDOREDUCTASE
    Gene: TLET_1705
    Organism Scientific: PSEUDOTHERMOTOGA LETTINGAE (STRAIN ATCC BAA-301 / DSM 14385 / NBRC 107922 / TMO)
    Organism Taxid: 416591
    Strain: ATCC BAA-301 / DSM 14385 / NBRC 107922 / TMO

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 26)

Asymmetric Unit (4, 26)
No.NameCountTypeFull Name
11PE1Ligand/IonPENTAETHYLENE GLYCOL
2EDO1Ligand/Ion1,2-ETHANEDIOL
3MSE22Mod. Amino AcidSELENOMETHIONINE
4T6T2Ligand/IonALPHA-D-TAGATOPYRANOSE
Biological Unit 1 (2, 12)
No.NameCountTypeFull Name
11PE-1Ligand/IonPENTAETHYLENE GLYCOL
2EDO-1Ligand/Ion1,2-ETHANEDIOL
3MSE11Mod. Amino AcidSELENOMETHIONINE
4T6T1Ligand/IonALPHA-D-TAGATOPYRANOSE
Biological Unit 2 (4, 14)
No.NameCountTypeFull Name
11PE1Ligand/IonPENTAETHYLENE GLYCOL
2EDO1Ligand/Ion1,2-ETHANEDIOL
3MSE11Mod. Amino AcidSELENOMETHIONINE
4T6T1Ligand/IonALPHA-D-TAGATOPYRANOSE

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLN A:29 , ASP A:82 , TYR A:132 , ASP A:134 , ARG A:136 , GLU A:187 , TRP A:264 , GLY A:296 , GLY A:297 , TRP A:298 , ARG A:367binding site for residue T6T A 501
2AC2SOFTWAREGLN B:29 , PHE B:59 , ASP B:82 , TYR B:132 , ASP B:134 , ARG B:136 , TRP B:264 , GLY B:296 , GLY B:297 , TRP B:298 , ARG B:367binding site for residue T6T B 501
3AC3SOFTWARETYR A:242 , MSE A:250 , SER B:51 , HOH B:858binding site for residue EDO B 502
4AC4SOFTWARETRP B:113 , ASN B:115 , MSE B:340 , CYS B:343 , PHE B:358 , PRO B:362 , HOH B:633 , HOH B:942binding site for residue 1PE B 503

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5CI5)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric Unit
No.Residues
1Gly A:334 -Pro A:335
2Gly B:334 -Pro B:335

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5CI5)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5CI5)

(-) Exons   (0, 0)

(no "Exon" information available for 5CI5)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:393
                                                                                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee.hhhhhhhhhhhhhhhhhhhhh..eeeeeehhhhhhhhhhhhhhhh....eeeee..hhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhh.ee..ee..eeeeeee.eeeeehhhhhhh.........hhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhh...............hhhhhhhhhhhhhhhhh..........hhhhhhhhhhh....eeee..hhhhhhhhhhhhhh..eeee...........eeeeeee......hhhhhhhhhhhhhhhhhhhhhhhhhh..ee.hhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ci5 A  19 SKTLTIWIGGQVAELDETWNSVIKTFEEKYGISVEVQLFGFDTYYDKLVTALQAGKGPDLAFADLGGWVPTFAEKGWLEPmEEHLKNWEGTAQIWPNLWPTVTYKKIRYGLPWYTDCRLLLYNKAmFEKAGLNPDNPPKTWDELLDAALKITDTKNRIYGYGVSGTKTEHTTLGYmmFLYAAGGKLLTDDYSKAAFDSPEGLKALKFYTDLAKKYNVSPNAIQYHEDDYRNmmAQNRVAmAIGGPWSFPLIEAANPDIAGKYSVALHPYDAKPASVLGGWALVIPSSSPNKEDAWKLAEYLTSFDVWmKWVEEKGGPmPTRmDVCKKSKLANDVKWQIIFETFPHAVARPPIPQYPQISEQIQTmVQRVLLGELTPEEAIKIAAENVNKILGA 411
                                    28        38        48        58        68        78        88        98|      108       118       128       138     | 148       158       168       178       188     ||198       208       218       228       238       248 ||    258       268       278       288       298       308       318       328       338 |     348       358       368       378    |  388       398       408   
                                                                                                           99-MSE                                      144-MSE                                           194-MSE                                                 250-MSE   |                                                                 326-MSE   336-MSE                                        383-MSE                        
                                                                                                                                                                                                          195-MSE                                                 251-MSE  |                                                                               340-MSE                                                                   
                                                                                                                                                                                                                                                                         258-MSE                                                                                                                                                     


Chain B from PDB  Type:PROTEIN  Length:392
                                                                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee.hhhhhhhhhhhhhhhhhhhhheeeeeeee...hhhhhhhhhhhh.....eeeee..hhhhhhhhh.....hhhhhhhh.hhhhhhhhhhhh.ee..ee..eeeeeee.eeeeehhhhhhh.........hhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhh...............hhhhhhhhhhhhhhhhh..........hhhhhhhhhh.....eeee..hhhhhhhhhhhhhh..eeee...........eeeeeee......hhhhhhhhhhhhhhhhhhhhhhhhhh..ee.hhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ci5 B  19 SKTLTIWIGGQVAELDETWNSVIKTFEEKYGISVEVQLFGFDTYYDKLVTALQAGKGPDLAFADLGGWVPTFAEKGWLEPmEEHLKNWEGTAQIWPNLWPTVTYKKIRYGLPWYTDCRLLLYNKAmFEKAGLNPDNPPKTWDELLDAALKITDTKNRIYGYGVSGTKTEHTTLGYmmFLYAAGGKLLTDDYSKAAFDSPEGLKALKFYTDLAKKYNVSPNAIQYHEDDYRNmmAQNRVAmAIGGPWSFPLIEAANPDIAGKYSVALHPYDAKPASVLGGWALVIPSSSPNKEDAWKLAEYLTSFDVWmKWVEEKGGPmPTRmDVCKKSKLANDVKWQIIFETFPHAVARPPIPQYPQISEQIQTmVQRVLLGELTPEEAIKIAAENVNKILG 410
                                    28        38        48        58        68        78        88        98|      108       118       128       138     | 148       158       168       178       188     ||198       208       218       228       238       248 ||    258       268       278       288       298       308       318       328       338 |     348       358       368       378    |  388       398       408  
                                                                                                           99-MSE                                      144-MSE                                           194-MSE                                                 250-MSE   |                                                                 326-MSE   336-MSE                                        383-MSE                       
                                                                                                                                                                                                          195-MSE                                                 251-MSE  |                                                                               340-MSE                                                                  
                                                                                                                                                                                                                                                                         258-MSE
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5CI5)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5CI5)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5CI5)

(-) Gene Ontology  (2, 2)

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